Rorug01G0270900

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000596
Physical Location & Seq
Forward (+)
38339787 .. 38343928
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0270900.1

Sequence Viewer

Length: 258 bp
ATGGGAGGAGGCGAGCATGCGCACGGCGAAGGGGCCCACGGCGGAGACTTCAGGGCGAAGGTGTGGAGCATGAGCGGTGGGCCCTACTGCAGGCCCAAGCACTGGAAGCGCAACACGGCCTTCGCCATGTTCGGAGTCTTCCTCATCTGCATTCCCATCGCCATGAAATCTGCCGAGCTCGAGCAACGGCCACATCAACCAGTTCGCCCCATTCCTTCACAAATGTGGTGCAAGAACTTTGGAAAGAAAGACTACTGA

Protein Analysis

85

Amino Acids

9.56

Weight (kDa)

9.6

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 2 cut(s) 42, 75
AcoI YGGCCR 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 90, 102
AleI CACNNNNGTG 1 cut(s) 223
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 5 cut(s) 33, 80, 92, 117, 188
ApaI GGGCCC 2 cut(s) 37, 84
AspLEI GCGC 2 cut(s) 22, 111
AspS9I GGNCC 5 cut(s) 33, 34, 80, 81, 93
AvaI CYCGRG 1 cut(s) 179
BaeGI GKGCMC 2 cut(s) 37, 84
BanII GRGCYC 3 cut(s) 37, 84, 180
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 1 cut(s) 164
BceAI ACGGC 4 cut(s) 40, 55, 132, 203
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 5 cut(s) 33, 34, 80, 81, 93
BmiI GGNNCC 3 cut(s) 34, 35, 82
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 102
Bse1I ACTGG 2 cut(s) 107, 200
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 90, 102
BseNI ACTGG 2 cut(s) 107, 200
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 2 cut(s) 37, 84
BshFI GGCC 5 cut(s) 35, 82, 94, 119, 190
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 90, 102
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 5 cut(s) 35, 82, 94, 119, 190
BsoBI CYCGRG 1 cut(s) 179
Bsp120I GGGCCC 2 cut(s) 33, 80
Bsp1286I GDGCHC 3 cut(s) 37, 84, 180
BspACI CCGC 2 cut(s) 42, 75
BspANI GGCC 5 cut(s) 35, 82, 94, 119, 190
BspLI GGNNCC 3 cut(s) 34, 35, 82
BspMAI CTGCAG 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 107, 200
BssECI CCNNGG 1 cut(s) 37
BstC8I GCNNGC 3 cut(s) 14, 18, 92
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 88
BstHHI GCGC 2 cut(s) 22, 111
BstMAI GTCTC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 2 cut(s) 37, 84
BstV2I GAAGAC 1 cut(s) 130
BsuRI GGCC 5 cut(s) 35, 82, 94, 119, 190
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 14, 18, 92
CfoI GCGC 2 cut(s) 22, 111
Cfr13I GGNCC 5 cut(s) 33, 34, 80, 81, 93
CviAII CATG 4 cut(s) 17, 70, 127, 163
CviJI RGCY 6 cut(s) 35, 82, 94, 119, 178, 190
CviKI_1 RGCY 6 cut(s) 35, 82, 94, 119, 178, 190
EaeI YGGCCR 1 cut(s) 188
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 3 cut(s) 37, 84, 180
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoO109I RGGNCCY 2 cut(s) 33, 81
EcoT38I GRGCYC 3 cut(s) 37, 84, 180
FaeI CATG 4 cut(s) 20, 73, 130, 166
FaiI YATR 4 cut(s) 18, 71, 128, 164
FatI CATG 4 cut(s) 16, 69, 126, 162
FriOI GRGCYC 3 cut(s) 37, 84, 180
FspAI RTGCGCAY 1 cut(s) 21
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 2 cut(s) 21, 110
HaeIII GGCC 5 cut(s) 35, 82, 94, 119, 190
HhaI GCGC 2 cut(s) 22, 111
Hin1II CATG 4 cut(s) 20, 73, 130, 166
Hin6I GCGC 2 cut(s) 20, 109
HinP1I GCGC 2 cut(s) 20, 109
HinfI GANTC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 134
HpyAV CCTTC 4 cut(s) 23, 52, 130, 225
HpyCH4V TGCA 3 cut(s) 90, 150, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 20, 73, 130, 166
HspAI GCGC 2 cut(s) 20, 109
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 4 cut(s) 37, 76, 88, 213
MbiI CCGCTC 1 cut(s) 75
MboII GAAGA 1 cut(s) 130
MhlI GDGCHC 3 cut(s) 37, 84, 180
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 161, 223
Mva1269I GAATGC 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 106
NlaIII CATG 4 cut(s) 20, 73, 130, 166
NlaIV GGNNCC 3 cut(s) 34, 35, 82
NmeAIII GCCGAG 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 21
NspI RCATGY 1 cut(s) 20
OliI CACNNNNGTG 1 cut(s) 223
PaeI GCATGC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 179
PctI GAATGC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 102
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 34, 35, 82
PspOMI GGGCCC 2 cut(s) 33, 80
PspPI GGNCC 5 cut(s) 33, 34, 80, 81, 93
PspXI VCTCGAGB 1 cut(s) 179
PstI CTGCAG 1 cut(s) 92
RseI CAYNNNNRTG 2 cut(s) 161, 223
SacI GAGCTC 1 cut(s) 180
Sau96I GGNCC 5 cut(s) 33, 34, 80, 81, 93
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 3 cut(s) 37, 84, 180
SetI ASST 2 cut(s) 63, 180
SfcI CTRYAG 1 cut(s) 88
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 161, 223
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SphI GCATGC 1 cut(s) 20
SsiI CCGC 2 cut(s) 42, 75
SstI GAGCTC 1 cut(s) 180
TaqI TCGA 1 cut(s) 180
TscAI CASTG 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 88
XceI RCATGY 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.