Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

2521598 .. 2523402

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1035200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGAGCGCTGAAGCAGCAAGAAACGTCGTAGGCATTATCGGTACGTGCGCTCCGTACAGGAATGTCATCTCCTTCGGGCTTTTTCTCTCCCCTGTTCCTACATTTTGGAAAATCATTAAGAAGAAGGACACGGAGGAGTTCAAGCCGGACCCTTACATGGCAACAGTACTGAACTGCTTGTTCTGGATCTTCTACGGCATGCCGTTTGTTCACCCTGACAGCACTCTTGTGGTCACCATTAACGCCGTCGGCCTTGCTCTCGAGGTCATCTACCTCACTATCTTCGTCGTTTATGCTTCGGCCAAAGGAAGGAAGAAGGTGGGTTTATGGCTTGCCGGTGAAGTAATCTTCTTCGCCGCGGTGGTTCTGATCACTCTGCTATGCGTGCACGGCACCAAGAACAGGTCTATGGTGGTTGGTATCATCTGCGATATTTTCAACATCATTATGTACTCTTCCCCTCTTACTATCATGGCGAAAGTGATCAAGACCAAGAGTGTCGAGTACATGCCGTTTTACCTCTCACTGACCAACTTCCTCAATGGTTTGATCTGGACCGCTTATGCTCTCATCAAGTTTGACATCTACATCCTGATTAGCAACAGTCTCGGTGCACTTTCTGGTTTGGTTCAACTCGTTCTTTATGCATGGTACTACAAGTCCACTCCGAAGGACAGTAAGGACGTCGCCGGAAAGCCTACAACAGAAGTGCAGCTCTCTGATACAGCTACCGGAGCAGCTATAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

251

Amino Acids

27.61

Weight (kDa)

9.03

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	22 - 103	4.8e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	139 - 222	1.1e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	690
AccB1I	GGYRCC	1 cut(s)	395
AccII	CGCG	1 cut(s)	362
AciI	CCGC	3 cut(s)	360, 362, 561
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	6 cut(s)	46, 59, 171, 455, 509, 656
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	3 cut(s)	160, 312, 405
AgsI	TTSAA	3 cut(s)	145, 442, 635
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	718, 731, 743
AluI	AGCT	3 cut(s)	718, 731, 743
Alw21I	GWGCWC	2 cut(s)	393, 619
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	2 cut(s)	389, 615
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	263
Aor51HI	AGCGCT	1 cut(s)	10
AoxI	GGCC	2 cut(s)	253, 303
ApaLI	GTGCAC	2 cut(s)	389, 615
ApeKI	GCWGC	3 cut(s)	17, 715, 740
AspLEI	GCGC	2 cut(s)	11, 53
AspS9I	GGNCC	2 cut(s)	151, 558
AsuHPI	GGTGA	4 cut(s)	16, 206, 229, 353
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	2 cut(s)	151, 558
BaeGI	GKGCMC	2 cut(s)	393, 619
BanI	GGYRCC	1 cut(s)	395
Bbv12I	GWGCWC	2 cut(s)	393, 619
BbvI	GCAGC	2 cut(s)	29, 727
BceAI	ACGGC	5 cut(s)	190, 214, 233, 409, 499
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BclI	TGATCA	2 cut(s)	372, 486
BcoDI	GTCTC	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	4 cut(s)	18, 360, 716, 741
BlsI	GCNGC	4 cut(s)	19, 361, 717, 742
BmcAI	AGTACT	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	151, 558
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	151, 558
BmiI	GGNNCC	2 cut(s)	153, 397
BsaAI	YACGTR	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	734
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 312, 405
Bse118I	RCCGGY	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	160, 312, 405
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	2 cut(s)	393, 619
BseXI	GCAGC	2 cut(s)	29, 727
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	255, 305
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	393, 619
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	149, 339, 693, 735
BslI	CCNNNNNNNGG	3 cut(s)	160, 312, 405
BsmAI	GTCTC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	255, 305
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	393, 619
Bsp143I	GATC	4 cut(s)	189, 372, 486, 552
BspACI	CCGC	3 cut(s)	360, 362, 561
BspANI	GGCC	2 cut(s)	255, 305
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	2 cut(s)	153, 397
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	4 cut(s)	189, 372, 486, 552
BssNI	GRCGYC	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	169, 608, 680
Bst6I	CTCTTC	1 cut(s)	463
BstACI	GRCGYC	1 cut(s)	687
BstBAI	YACGTR	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	203, 336, 389
BstDSI	CCRYGG	1 cut(s)	360
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	591
BstFNI	CGCG	1 cut(s)	362
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 53
BstKTI	GATC	4 cut(s)	192, 375, 489, 555
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	4 cut(s)	189, 372, 486, 552
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 388, 393, 737
BstNSI	RCATGY	2 cut(s)	205, 514
BstPI	GGTNACC	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	2 cut(s)	393, 619
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	29, 727
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	255, 305
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	3 cut(s)	203, 336, 389
CfoI	GCGC	2 cut(s)	11, 53
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	151, 558
Cfr42I	CCGCGG	1 cut(s)	363
Csp6I	GTAC	6 cut(s)	45, 58, 170, 454, 508, 655
CviAII	CATG	5 cut(s)	160, 202, 475, 511, 651
CviJI	RGCY	9 cut(s)	82, 148, 255, 305, 334, 700, 718, 731, 743
CviKI_1	RGCY	9 cut(s)	82, 148, 255, 305, 334, 700, 718, 731, 743
CviQI	GTAC	6 cut(s)	45, 58, 170, 454, 508, 655
DpnI	GATC	4 cut(s)	191, 374, 488, 554
DpnII	GATC	4 cut(s)	189, 372, 486, 552
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco47I	GGWCC	2 cut(s)	151, 558
Eco47III	AGCGCT	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	652
FaeI	CATG	5 cut(s)	163, 205, 478, 514, 654
FatI	CATG	5 cut(s)	159, 201, 474, 510, 650
FbaI	TGATCA	2 cut(s)	372, 486
Fnu4HI	GCNGC	4 cut(s)	18, 360, 716, 741
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	18, 360, 716, 741
GlaI	GCGC	2 cut(s)	10, 52
GluI	GCNGC	4 cut(s)	18, 360, 716, 741
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	255, 305
HapII	CCGG	4 cut(s)	149, 339, 693, 735
HhaI	GCGC	2 cut(s)	11, 53
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	5 cut(s)	163, 205, 478, 514, 654
Hin6I	GCGC	2 cut(s)	9, 51
HinP1I	GCGC	2 cut(s)	9, 51
HpaII	CCGG	4 cut(s)	149, 339, 693, 735
HphI	GGTGA	4 cut(s)	16, 206, 229, 353
Hpy166II	GTNNAC	4 cut(s)	214, 391, 617, 666
Hpy188I	TCNGA	4 cut(s)	372, 672, 724, 752
Hpy188III	TCNNGA	5 cut(s)	187, 263, 490, 556, 595
Hpy8I	GTNNAC	4 cut(s)	214, 391, 617, 666
Hpy99I	CGWCG	4 cut(s)	32, 254, 293, 692
HpyAV	CCTTC	5 cut(s)	85, 121, 306, 313, 667
HpyCH4III	ACNGT	3 cut(s)	169, 608, 680
HpyCH4IV	ACGT	3 cut(s)	27, 47, 687
HpyCH4V	TGCA	4 cut(s)	391, 617, 650, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 388, 393, 737
HpySE526I	ACGT	3 cut(s)	27, 47, 687
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	5 cut(s)	163, 205, 478, 514, 654
HspAI	GCGC	2 cut(s)	9, 51
Ksp22I	TGATCA	2 cut(s)	372, 486
KspI	CCGCGG	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	189, 372, 486, 552
LmnI	GCTCC	2 cut(s)	58, 737
Lsp1109I	GCAGC	2 cut(s)	29, 727
MaeII	ACGT	3 cut(s)	27, 47, 687
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	4 cut(s)	191, 374, 488, 554
MboI	GATC	4 cut(s)	189, 372, 486, 552
MboII	GAAGA	7 cut(s)	136, 184, 277, 328, 343, 346, 450
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	2 cut(s)	393, 619
MnlI	CCTC	6 cut(s)	130, 259, 287, 474, 533, 551
Mph1103I	ATGCAT	1 cut(s)	652
MseI	TTAA	2 cut(s)	120, 243
MslI	CAYNNNNRTG	2 cut(s)	230, 449
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	4 cut(s)	149, 339, 693, 735
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	4 cut(s)	17, 388, 393, 737
NdeII	GATC	4 cut(s)	189, 372, 486, 552
NlaIII	CATG	5 cut(s)	163, 205, 478, 514, 654
NlaIV	GGNNCC	2 cut(s)	153, 397
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	2 cut(s)	205, 514
OliI	CACNNNNGTG	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	19, 361, 717, 742
Ppu21I	YACGTR	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	153, 397
PspPI	GGNCC	2 cut(s)	151, 558
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	6 cut(s)	46, 59, 171, 455, 509, 656
RsaNI	GTAC	6 cut(s)	45, 58, 170, 454, 508, 655
RseI	CAYNNNNRTG	2 cut(s)	230, 449
SacII	CCGCGG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	120, 243
SatI	GCNGC	4 cut(s)	18, 360, 716, 741
Sau3AI	GATC	4 cut(s)	189, 372, 486, 552
Sau96I	GGNCC	2 cut(s)	151, 558
ScaI	AGTACT	1 cut(s)	171
SduI	GDGCHC	2 cut(s)	393, 619
SfcI	CTRYAG	1 cut(s)	744
Sfr274I	CTCGAG	1 cut(s)	263
Sfr303I	CCGCGG	1 cut(s)	363
SgrBI	CCGCGG	1 cut(s)	363
SinI	GGWCC	2 cut(s)	151, 558
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	230, 449
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SphI	GCATGC	1 cut(s)	205
SsiI	CCGC	3 cut(s)	360, 362, 561
TaaI	ACNGT	3 cut(s)	169, 608, 680
TaiI	ACGT	3 cut(s)	30, 50, 690
TaqI	TCGA	2 cut(s)	264, 504
TatI	WGTACW	3 cut(s)	169, 453, 507
TauI	GCSGC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	120, 243
Tru9I	TTAA	2 cut(s)	120, 243
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	17, 715, 740
Tsp45I	GTSAC	1 cut(s)	235
TspGWI	ACGGA	2 cut(s)	45, 149
TspRI	CASTG	1 cut(s)	534
VneI	GTGCAC	2 cut(s)	389, 615
VpaK11BI	GGWCC	2 cut(s)	151, 558
XceI	RCATGY	2 cut(s)	205, 514
XhoI	CTCGAG	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	688
ZrmI	AGTACT	1 cut(s)	171
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.