Rorug02G0553600

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
68096394 .. 68099157
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0553600.1

Sequence Viewer

Length: 1266 bp
ATGGCTTTGGTTCCAATATGCTACAGGATACCATACAAAGGGCATATTCAACCCATACGTAATGTAATAAGCGGACCAAGTTCATCTAAAGGACTAGAAAGCCGTCTAAGATGCAGTTTAGCACATAATTCACAAGAACACAATCGTGGGATGGTTCCGTATGCATCAGATGCTAGAACGAATGAGAAGCAGCTGAGTTCTTTAGATTCCTACTTTGAAAAACTCCAAAATAGCACAACTTTGCCTTCAGAAAATTCAAGCAAGACAACTGAGCCACTCGGTAGAAAAAATGGTCATTTGGGATTGGAGGAGGAGTTGGAGTATCTTGATGCTTATCTTGAAAAACTTAATAAAGATGCAAACCAGATTGAAAAACCAGTTGATCTTGCAACTGGAGACAATATAGTTCCAAAATCATCATCTATCATTCAACAATCCAAAAAAGGTGCTGAAAGGAAACTGGTCAAGAGCTTTACAAATACAACTGATGATAATGGTCAAGATAGCGAAATCTCTGATCTCTACCTAGTAAGCATATTGGGTTCTATAAACATTGCAGTTTTTCTGTTTGAGATAGCAAGTCCAGTTAGGAATTCTGACTTGGAGCTTTTTTCTCTTCCATTGTTATATGGAGCAAAGATAAATGATTTGATCCTGGTCGGAGAGTGGTGGAGGCTAGTCACACCGATGTTTCTGCATGCTGGACTTATTCATATAGCTATTGGTTCTTGGGGACTTGTTACATTTGGACCTAAGGTGTGCAGAGGCTATGGTTCATTCACATTTTTCTTGATATATATACTTGGAGGAATCTCTGGCAATTTGATTAGCTTTCTCCACACACCAGAACCAACTGTTGGTGGAACAGGACCAATATTTGCCATGATCGGAGCTTGGCTCATTTATGAGACCCAAAACAAAGATATAATTGCAAAGGAAGTCTCAGAGACTATGTTCCAAAAGGCAATAATAACTACAGCTCTTACCTTCACAGTGAGCAGTTTTGGTCCAATTGATGACTGGACACATTTTGGAGCTGCATTGACAGGAATAGCATATGGGTTTTTGACATGCCCAAGTCTTCAACTGGACGAAGCATCATCATCTTCAACAAGTGGACAAGAGGAAGGAATCACACTTGTTAGACGTTATGCTGATCCCTGCAAATCACTTTTTCTCTTCACAGTGTTTGTTCTTGTTCTGAGTTCTCTACTTCTCTTTTTTGAACCTCCACTCAACGCCTTAGCATCAGACTCTTCTGTGTAG

Protein Analysis

421

Amino Acids

46.14

Weight (kDa)

5.36

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 221 - 359 1.3e-32 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 857
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 646, 1151
AcsI RAATTY 2 cut(s) 253, 592
AcuI CTGAAG 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 38, 857
AgsI TTSAA 9 cut(s) 50, 218, 258, 341, 371, 431, 1085, 1110, 1226
AjnI CCWGG 1 cut(s) 654
AjuI GAANNNNNNNTTGG 4 cut(s) 584, 616, 840, 872
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 8 cut(s) 193, 471, 607, 719, 831, 893, 980, 1037
AluI AGCT 8 cut(s) 193, 471, 607, 719, 831, 893, 980, 1037
Alw26I GTCTC 4 cut(s) 390, 902, 941, 946
AlwI GGATC 2 cut(s) 646, 1151
ApeKI GCWGC 2 cut(s) 190, 1037
ApoI RAATTY 2 cut(s) 253, 592
AspS9I GGNCC 4 cut(s) 74, 749, 869, 1007
AvaII GGWCC 4 cut(s) 74, 749, 869, 1007
AxyI CCTNAGG 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 1073
BbvI GCAGC 2 cut(s) 202, 1024
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 676, 710
BciT130I CCWGG 1 cut(s) 656
BciVI GTATCC 1 cut(s) 21
BcoDI GTCTC 4 cut(s) 390, 902, 941, 946
BfaI CTAG 4 cut(s) 95, 174, 527, 677
BfmI CTRYAG 2 cut(s) 22, 975
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 2 cut(s) 191, 1038
BlsI GCNGC 2 cut(s) 192, 1039
Bme1390I CCNGG 1 cut(s) 656
Bme18I GGWCC 4 cut(s) 74, 749, 869, 1007
BmgT120I GGNCC 4 cut(s) 74, 749, 869, 1007
BmiI GGNNCC 2 cut(s) 12, 156
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 7 cut(s) 101, 160, 173, 319, 346, 1106, 1256
BpiI GAAGAC 1 cut(s) 1073
BplI GAGNNNNNCTC 2 cut(s) 882, 914
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 1243
BsaAI YACGTR 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 902
BsaXI ACNNNNNCTCC 4 cut(s) 299, 305, 329, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 857
Bse1I ACTGG 6 cut(s) 377, 397, 465, 584, 1025, 1092
Bse21I CCTNAGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 656
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 38, 857
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 4 cut(s) 185, 261, 957, 1193
BseNI ACTGG 6 cut(s) 377, 397, 465, 584, 1025, 1092
BseRI GAGGAG 2 cut(s) 323, 326
BseXI GCAGC 2 cut(s) 202, 1024
BsgI GTGCAG 1 cut(s) 781
BslFI GGGAC 1 cut(s) 747
BslI CCNNNNNNNGG 2 cut(s) 38, 857
BsmAI GTCTC 4 cut(s) 390, 902, 941, 946
BsmFI GGGAC 1 cut(s) 747
Bso31I GGTCTC 1 cut(s) 902
Bsp143I GATC 5 cut(s) 382, 517, 651, 885, 1156
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 4 cut(s) 186, 262, 956, 1194
BspLI GGNNCC 2 cut(s) 12, 156
BspPI GGATC 2 cut(s) 646, 1151
BspTNI GGTCTC 1 cut(s) 902
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 6 cut(s) 377, 397, 465, 584, 1025, 1092
BssMI GATC 5 cut(s) 382, 517, 651, 885, 1156
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 3 cut(s) 856, 994, 1186
Bst6I CTCTTC 3 cut(s) 621, 1184, 1261
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 699
BstDEI CTNAG 7 cut(s) 107, 194, 270, 753, 943, 1202, 1243
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 5 cut(s) 385, 520, 654, 888, 1159
BstMAI GTCTC 4 cut(s) 390, 902, 941, 946
BstMBI GATC 5 cut(s) 382, 517, 651, 885, 1156
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 656
BstNSI RCATGY 2 cut(s) 701, 1074
BstSCI CCNGG 1 cut(s) 654
BstSFI CTRYAG 2 cut(s) 22, 975
BstSNI TACGTA 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 202, 1024
BstV2I GAAGAC 1 cut(s) 1073
Bsu36I CCTNAGG 1 cut(s) 753
BsuI GTATCC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 999, 1191
Cac8I GCNNGC 1 cut(s) 699
Cfr13I GGNCC 4 cut(s) 74, 749, 869, 1007
CviAII CATG 3 cut(s) 698, 883, 1071
DdeI CTNAG 7 cut(s) 107, 194, 270, 753, 943, 1202, 1243
DpnI GATC 5 cut(s) 384, 519, 653, 887, 1158
DpnII GATC 5 cut(s) 382, 517, 651, 885, 1156
Eam1104I CTCTTC 3 cut(s) 621, 1184, 1261
EarI CTCTTC 3 cut(s) 621, 1184, 1261
Eco105I TACGTA 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 902
Eco47I GGWCC 4 cut(s) 74, 749, 869, 1007
Eco57I CTGAAG 1 cut(s) 231
Eco81I CCTNAGG 1 cut(s) 753
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 654
EcoT22I ATGCAT 1 cut(s) 166
FaeI CATG 3 cut(s) 701, 886, 1074
FaqI GGGAC 1 cut(s) 747
FatI CATG 3 cut(s) 697, 882, 1070
FauNDI CATATG 1 cut(s) 1057
Fnu4HI GCNGC 2 cut(s) 191, 1038
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 191, 1038
FspBI CTAG 4 cut(s) 95, 174, 527, 677
GluI GCNGC 2 cut(s) 191, 1038
GsuI CTGGAG 1 cut(s) 414
Hin1II CATG 3 cut(s) 701, 886, 1074
HinfI GANTC 4 cut(s) 206, 810, 1131, 1253
Hpy166II GTNNAC 1 cut(s) 1118
Hpy188I TCNGA 9 cut(s) 169, 250, 517, 598, 662, 890, 946, 1203, 1252
Hpy188III TCNNGA 5 cut(s) 326, 338, 466, 500, 790
Hpy8I GTNNAC 1 cut(s) 1118
HpyAV CCTTC 3 cut(s) 255, 997, 1121
HpyCH4III ACNGT 3 cut(s) 856, 994, 1186
HpyCH4IV ACGT 2 cut(s) 58, 1147
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 7 cut(s) 107, 194, 270, 753, 943, 1202, 1243
HpySE526I ACGT 2 cut(s) 58, 1147
Hsp92II CATG 3 cut(s) 701, 886, 1074
Kzo9I GATC 5 cut(s) 382, 517, 651, 885, 1156
LmnI GCTCC 4 cut(s) 604, 632, 890, 1034
Lsp1109I GCAGC 2 cut(s) 202, 1024
LweI GCATC 7 cut(s) 101, 160, 173, 319, 346, 1106, 1256
MaeI CTAG 4 cut(s) 95, 174, 527, 677
MaeII ACGT 2 cut(s) 58, 1147
MaeIII GTNAC 2 cut(s) 679, 739
MalI GATC 5 cut(s) 384, 519, 653, 887, 1158
MboI GATC 5 cut(s) 382, 517, 651, 885, 1156
MboII GAAGA 5 cut(s) 608, 1073, 1098, 1171, 1248
MfeI CAATTG 1 cut(s) 1011
MluCI AATT 6 cut(s) 127, 253, 592, 820, 927, 1011
MlyI GAGTC 1 cut(s) 1247
MmeI TCCRAC 2 cut(s) 297, 640
MnlI CCTC 7 cut(s) 301, 304, 666, 758, 800, 1117, 1239
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 2 cut(s) 144, 686
MspA1I CMGCKG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 656
MunI CAATTG 1 cut(s) 1011
MvaI CCWGG 1 cut(s) 656
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeI CATATG 1 cut(s) 1057
NdeII GATC 5 cut(s) 382, 517, 651, 885, 1156
NlaIII CATG 3 cut(s) 701, 886, 1074
NlaIV GGNNCC 2 cut(s) 12, 156
NmuCI GTSAC 1 cut(s) 679
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 2 cut(s) 701, 1074
OliI CACNNNNGTG 1 cut(s) 144
PaeI GCATGC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 206, 810, 1131
PflMI CCANNNNNTGG 1 cut(s) 857
PkrI GCNGC 2 cut(s) 192, 1039
PleI GAGTC 1 cut(s) 1247
PpsI GAGTC 1 cut(s) 1247
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 12, 156
PspPI GGNCC 4 cut(s) 74, 749, 869, 1007
PvuII CAGCTG 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 144, 686
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 191, 1038
Sau3AI GATC 5 cut(s) 382, 517, 651, 885, 1156
Sau96I GGNCC 4 cut(s) 74, 749, 869, 1007
SchI GAGTC 1 cut(s) 1247
ScrFI CCNGG 1 cut(s) 656
SfaNI GCATC 7 cut(s) 101, 160, 173, 319, 346, 1106, 1256
SfcI CTRYAG 2 cut(s) 22, 975
SinI GGWCC 4 cut(s) 74, 749, 869, 1007
SmiMI CAYNNNNRTG 2 cut(s) 144, 686
SnaBI TACGTA 1 cut(s) 59
SphI GCATGC 1 cut(s) 701
Sse9I AATT 6 cut(s) 127, 253, 592, 820, 927, 1011
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 876
SspMI CTAG 4 cut(s) 95, 174, 527, 677
StyD4I CCNGG 1 cut(s) 654
TaaI ACNGT 3 cut(s) 856, 994, 1186
TaiI ACGT 2 cut(s) 61, 1150
TasI AATT 6 cut(s) 127, 253, 592, 820, 927, 1011
TfiI GAWTC 3 cut(s) 206, 810, 1131
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 999, 1191
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 2 cut(s) 190, 1037
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 3 cut(s) 72, 701, 765
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 999, 1191
Van91I CCANNNNNTGG 1 cut(s) 857
VpaK11BI GGWCC 4 cut(s) 74, 749, 869, 1007
XapI RAATTY 2 cut(s) 253, 592
XceI RCATGY 2 cut(s) 701, 1074
XcmI CCANNNNNNNNNTGG 1 cut(s) 1017
XspI CTAG 4 cut(s) 95, 174, 527, 677
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.