Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

50684906 .. 50685280

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG284500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTAGCAATACCTGAGCATAAGATGGCAATGAATCTACCTTTGAGGGCTGTCGTAGTTGGTGCGATCTGTGATTTTTTCAATGTCCTCATGTATGGCTCTCCTTTGTTCAACGTGAGAGATGTCATTAAAACTAGGAGTGTGAAATATATGCCATTCACTCTCCTAGTGGCCAACTTCCTGAATGGTTGTTGCTGGACATCCTATGCTCTCATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGCGCAATTTTTGGGGCATTTCAATTGATAGTTTATGCAAGATACTACAAAACTACACCAAAAGATGAAGACCTCTCTGGCAAGACTACTAATGAAGTGCAACTCTGTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

124

Amino Acids

13.89

Weight (kDa)

8.7

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	19 - 103	4.4e-22	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	171
AfaI	GTAC	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	82, 112, 278
Alw26I	GTCTC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	330
BccI	CCATC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	135, 167
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	36
BssMI	GATC	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	3 cut(s)	50, 99, 173
CviKI_1	RGCY	3 cut(s)	50, 99, 173
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	257
FaeI	CATG	1 cut(s)	94
FaiI	YATR	7 cut(s)	21, 92, 96, 150, 152, 207, 291
FatI	CATG	1 cut(s)	90
FokI	GGATG	1 cut(s)	187
FspBI	CTAG	2 cut(s)	135, 167
GlaI	GCGC	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	293, 355
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	27, 181, 194, 318
MaeI	CTAG	2 cut(s)	135, 167
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	1 cut(s)	335
MfeI	CAATTG	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	261, 278
MluNI	TGGCCA	1 cut(s)	173
MnlI	CCTC	3 cut(s)	39, 98, 338
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	173
MunI	CAATTG	1 cut(s)	278
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	66
SetI	ASST	4 cut(s)	16, 43, 117, 330
Sse9I	AATT	2 cut(s)	261, 278
SspMI	CTAG	2 cut(s)	135, 167
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	117
TasI	AATT	2 cut(s)	261, 278
TatI	WGTACW	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TspDTI	ATGAA	4 cut(s)	47, 223, 336, 363
XspI	CTAG	2 cut(s)	135, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.