Rh4CG192300

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
41341252 .. 41342116
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG192300.1

Sequence Viewer

Length: 732 bp
ATGGTGCACCTAGATGCTAGGTTCGTGGTCGGTGTGGTTGGAAATATCATCTCTGGCGGGCTTTTTCTCTCTCCAATACCTACGTTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTGCAACAGTGTTGAACTGTTTGTTATGGTGTTACTATGGATTGCCATTTATTAATCCAAACAGCATTTTAGTTGTCACCATTAATGGAATTGGGTTACTTATAGAGCTTATATATCTGGGCATATTCTTCTATTATACTTCAGCAAAAGGACGAAAGAGGGTTGCTACATACTTTGTATGTGAACTAGTTTTCTTTGGGGCTGTTGTGGCTGCAACTATGTTGGCAATACCCGAGCATAAGATGAAGATGAATCGACATTTGAGGGCTGTTGTAATTGGTATTATCTGTGACTTTTTCAATGTCCTCATGTATAGCTCTCCTCTATTCATCTTGAGAGATGTCTTTAAAACAAAGAGTGTGCAATACATGCCATTCTCACTCTCGGTTGCTAACTTTTTGAATGGTTGTTGCTGGACTTCCTATGCTCTTATTGGAAAAGTGGACTACTTTATTTTGGTTAGCAACAGTCTCGGTGCAATCGCTGGAGCAATTCAATTGATAGTTTATGCAATATACTACAAATCTACACCAAAAAATGAAGACCCCGCTGACAAGGCTACTAATGAAGTGCAACTCGCAACTATTGTCTAA

Protein Analysis

243

Amino Acids

27.17

Weight (kDa)

8.95

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 9 - 96 1.8e-21 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 138 - 222 1.6e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 687
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 264
AgsI TTSAA 4 cut(s) 154, 439, 541, 635
AhlI ACTAGT 1 cut(s) 325
AluBI AGCT 3 cut(s) 119, 247, 456
AluI AGCT 3 cut(s) 119, 247, 456
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 614
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 371
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 350
AseI ATTAAT 2 cut(s) 192, 222
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BcoDI GTCTC 1 cut(s) 614
BcuI ACTAGT 1 cut(s) 325
BfaI CTAG 3 cut(s) 11, 18, 326
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 371
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 687
BpmI CTGGAG 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 493
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 614
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 57, 687
BspPI GGATC 1 cut(s) 119
BssMI GATC 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 148, 158, 608
BstAPI GCANNNNNTGC 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 347, 508, 695
BstNSI RCATGY 1 cut(s) 511
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 59
CviAII CATG 2 cut(s) 448, 508
CviJI RGCY 8 cut(s) 61, 119, 247, 341, 350, 407, 456, 698
CviKI_1 RGCY 8 cut(s) 61, 119, 247, 341, 350, 407, 456, 698
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraI TTTAAA 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 371
FaeI CATG 2 cut(s) 451, 511
FatI CATG 2 cut(s) 447, 507
FauI CCCGC 2 cut(s) 50, 694
Fnu4HI GCNGC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 3 cut(s) 11, 18, 326
GluI GCNGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 645
Hin1II CATG 2 cut(s) 451, 511
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 1 cut(s) 391
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 3 cut(s) 7, 323, 583
Hpy188III TCNNGA 1 cut(s) 472
Hpy8I GTNNAC 3 cut(s) 7, 323, 583
HpyCH4III ACNGT 3 cut(s) 148, 158, 608
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 7 cut(s) 7, 143, 353, 502, 617, 650, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 508, 695
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 2 cut(s) 451, 511
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 626
LpnPI CCDG 4 cut(s) 39, 242, 538, 609
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 11, 18, 326
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 4 cut(s) 170, 214, 234, 428
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 259, 397, 692
MfeI CAATTG 1 cut(s) 635
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 228, 414, 630, 635
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 4 cut(s) 291, 396, 455, 471
MseI TTAA 3 cut(s) 192, 222, 486
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 689
MunI CAATTG 1 cut(s) 635
MwoI GCNNNNNNNGC 3 cut(s) 347, 508, 695
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 451, 511
NmuCI GTSAC 2 cut(s) 214, 428
NspI RCATGY 1 cut(s) 511
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 1 cut(s) 352
PshBI ATTAAT 2 cut(s) 192, 222
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 3 cut(s) 192, 222, 486
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 9
SetI ASST 9 cut(s) 12, 23, 82, 86, 121, 136, 141, 249, 458
SfaNI GCATC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
SpeI ACTAGT 1 cut(s) 325
Sse9I AATT 4 cut(s) 228, 414, 630, 635
SsiI CCGC 2 cut(s) 57, 687
SspMI CTAG 3 cut(s) 11, 18, 326
TaaI ACNGT 3 cut(s) 148, 158, 608
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 123, 394
TasI AATT 4 cut(s) 228, 414, 630, 635
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 3 cut(s) 192, 222, 486
Tru9I TTAA 3 cut(s) 192, 222, 486
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 214, 428
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 2 cut(s) 214, 428
TspDTI ATGAA 6 cut(s) 76, 398, 404, 457, 693, 720
TspRI CASTG 1 cut(s) 153
VneI GTGCAC 1 cut(s) 5
VspI ATTAAT 2 cut(s) 192, 222
XceI RCATGY 1 cut(s) 511
XspI CTAG 3 cut(s) 11, 18, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.