RLG00000027823

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
15699758 .. 15701084
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027823

Sequence Viewer

Length: 876 bp
ATGAAGCTGCAGTATCTGAGCAGCAAACAGGCGTCTTTGGCAGCTAAAGGGACTAGAGCTGTGCCGTTGAGTTGGGTTTGGGACGAAGCTTATGGAAATTGCAAAGGTCACATATACGTTTCCTTGGTCATTTTCCTCGCAAAGATGGTGCACGCAGATGTTAGGTTCGTGGTCGGTGTGGTTGGGAATGTCATCTCTGGCGGCCTTTTCCTCTCCCCAATTCCTACGTTCATACAAATACGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAGACCTTACCTTACAACAGTGTTAAACTGTTTGTTCTGGTGTTACTACGGATTGCCATTCATTAACCCAAATAACATTTTAGTTGTCACTATTAATGGAATTGGGCTATTTATAGAGTTCATATATCTTATCATATTCTTCTATTATGCTGCAGCAAAAGGACGAAAGAGGGTTGCTACATACTTTATATGTGAACTTATTTTATTTGGGGCTTTGGTGGCTGCAACTATGTTGGCAATACCTGAGCATAAGATGGCAATGAATCGACCTTTGAGGGCTGTCGTAGTTGGTGTGATCTGTGATTTTTTCAATGTCCTCATGTATGGCTCTCCTTTGTTCAATGTGAGAGATGTCTTTAAAACTAGGAGTGTGAAATATATGCCATTCACTCTCCTAGTGGCCAACTTCCTGAATGGTTGTTGCTGGACATCCTATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTTTTGGAGCATTTCAATTGATAATTTATGCAATATTCTACAAAACTACACCAAAAGATGAAGACCTCTCTAGCAAGACTACTAATGAAGTGCAACTCTGTACTAATGTCTAA

Protein Analysis

292

Amino Acids

32.72

Weight (kDa)

9.25

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 57 - 144 6.3e-22 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 186 - 269 8e-21 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 865
AgsI TTSAA 3 cut(s) 583, 613, 779
AluBI AGCT 5 cut(s) 7, 44, 59, 89, 263
AluI AGCT 5 cut(s) 7, 44, 59, 89, 263
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 758
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 202, 672
ApaLI GTGCAC 1 cut(s) 149
ApeKI GCWGC 6 cut(s) 7, 21, 41, 422, 425, 494
AseI ATTAAT 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 153
BalI TGGCCA 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 831
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 5 cut(s) 33, 53, 409, 437, 481
BccI CCATC 2 cut(s) 139, 520
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 736, 770
BcoDI GTCTC 1 cut(s) 758
BfaI CTAG 4 cut(s) 54, 636, 668, 834
BfmI CTRYAG 2 cut(s) 8, 423
BisI GCNGC 7 cut(s) 8, 22, 42, 202, 423, 426, 495
BlsI GCNGC 7 cut(s) 9, 23, 43, 203, 424, 427, 496
BpiI GAAGAC 1 cut(s) 831
Bpu10I CCTNAGC 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 701
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 8, 507
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 5 cut(s) 33, 53, 409, 437, 481
BshFI GGCC 2 cut(s) 204, 674
BsiHKAI GWGCWC 1 cut(s) 153
BslFI GGGAC 2 cut(s) 64, 95
BsmAI GTCTC 1 cut(s) 758
BsmFI GGGAC 2 cut(s) 64, 95
BsnI GGCC 2 cut(s) 204, 674
Bso31I GGTCTC 1 cut(s) 758
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 268, 567
BspACI CCGC 1 cut(s) 201
BspANI GGCC 2 cut(s) 204, 674
BspCNI CTCAG 2 cut(s) 9, 508
BspMAI CTGCAG 2 cut(s) 12, 427
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 268, 567
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 3 cut(s) 292, 302, 752
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 17, 516
BstF5I GGATG 1 cut(s) 701
BstKTI GATC 2 cut(s) 271, 570
BstMAI GTCTC 1 cut(s) 758
BstMBI GATC 2 cut(s) 268, 567
BstMWI GCNNNNNNNGC 2 cut(s) 38, 491
BstSFI CTRYAG 2 cut(s) 8, 423
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 5 cut(s) 33, 53, 409, 437, 481
BstV2I GAAGAC 1 cut(s) 831
BsuRI GGCC 2 cut(s) 204, 674
BtsCI GGATG 1 cut(s) 701
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 153
CaiI CAGNNNCTG 1 cut(s) 16
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 864
CviAII CATG 1 cut(s) 592
CviQI GTAC 1 cut(s) 864
DdeI CTNAG 2 cut(s) 17, 516
DpnI GATC 2 cut(s) 270, 569
DpnII GATC 2 cut(s) 268, 567
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 595
FaqI GGGAC 2 cut(s) 64, 95
FatI CATG 1 cut(s) 591
Fnu4HI GCNGC 7 cut(s) 8, 22, 42, 202, 423, 426, 495
FokI GGATG 1 cut(s) 688
Fsp4HI GCNGC 7 cut(s) 8, 22, 42, 202, 423, 426, 495
FspBI CTAG 4 cut(s) 54, 636, 668, 834
GluI GCNGC 7 cut(s) 8, 22, 42, 202, 423, 426, 495
HaeIII GGCC 2 cut(s) 204, 674
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 595
HindIII AAGCTT 2 cut(s) 87, 261
HinfI GANTC 1 cut(s) 535
Hpy166II GTNNAC 3 cut(s) 151, 467, 727
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 682
Hpy8I GTNNAC 3 cut(s) 151, 467, 727
HpyCH4III ACNGT 3 cut(s) 292, 302, 752
HpyCH4IV ACGT 2 cut(s) 117, 227
HpyCH4V TGCA 8 cut(s) 10, 102, 151, 425, 497, 761, 794, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 491
HpyF3I CTNAG 2 cut(s) 17, 516
HpySE526I ACGT 2 cut(s) 117, 227
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 595
Kzo9I GATC 2 cut(s) 268, 567
LmnI GCTCC 1 cut(s) 770
LpnPI CCDG 6 cut(s) 14, 183, 295, 528, 682, 695
Lsp1109I GCAGC 5 cut(s) 33, 53, 409, 437, 481
MaeI CTAG 4 cut(s) 54, 636, 668, 834
MaeII ACGT 2 cut(s) 117, 227
MaeIII GTNAC 3 cut(s) 107, 314, 358
MalI GATC 2 cut(s) 270, 569
MboI GATC 2 cut(s) 268, 567
MboII GAAGA 2 cut(s) 403, 836
MfeI CAATTG 1 cut(s) 779
MhlI GDGCHC 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 6 cut(s) 97, 219, 372, 762, 779, 786
MluNI TGGCCA 1 cut(s) 674
MnlI CCTC 6 cut(s) 146, 221, 435, 540, 599, 839
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 4 cut(s) 296, 336, 366, 630
MslI CAYNNNNRTG 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 674
MunI CAATTG 1 cut(s) 779
MwoI GCNNNNNNNGC 2 cut(s) 38, 491
NdeII GATC 2 cut(s) 268, 567
NlaIII CATG 1 cut(s) 595
NmuCI GTSAC 2 cut(s) 107, 358
PfeI GAWTC 1 cut(s) 535
PkrI GCNGC 7 cut(s) 9, 23, 43, 203, 424, 427, 496
PshBI ATTAAT 1 cut(s) 366
PstI CTGCAG 2 cut(s) 12, 427
PstNI CAGNNNCTG 1 cut(s) 16
RsaI GTAC 1 cut(s) 865
RsaNI GTAC 1 cut(s) 864
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 4 cut(s) 296, 336, 366, 630
SatI GCNGC 7 cut(s) 8, 22, 42, 202, 423, 426, 495
Sau3AI GATC 2 cut(s) 268, 567
SduI GDGCHC 1 cut(s) 153
SfcI CTRYAG 2 cut(s) 8, 423
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 6 cut(s) 97, 219, 372, 762, 779, 786
SsiI CCGC 1 cut(s) 201
SspI AATATT 1 cut(s) 798
SspMI CTAG 4 cut(s) 54, 636, 668, 834
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 292, 302, 752
TaiI ACGT 2 cut(s) 120, 230
TaqI TCGA 2 cut(s) 267, 538
TasI AATT 6 cut(s) 97, 219, 372, 762, 779, 786
TatI WGTACW 1 cut(s) 863
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 4 cut(s) 296, 336, 366, 630
Tru9I TTAA 4 cut(s) 296, 336, 366, 630
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 2 cut(s) 107, 358
TseI GCWGC 6 cut(s) 7, 21, 41, 422, 425, 494
Tsp45I GTSAC 2 cut(s) 107, 358
TspDTI ATGAA 8 cut(s) 17, 220, 322, 382, 548, 724, 837, 864
TspGWI ACGGA 2 cut(s) 256, 336
TspRI CASTG 1 cut(s) 297
VneI GTGCAC 1 cut(s) 149
VspI ATTAAT 1 cut(s) 366
XspI CTAG 4 cut(s) 54, 636, 668, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.