Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

38815559 .. 38817271

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0275700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGAATCAGCATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGAATGTGTATGAGAGCCTTAGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTCAGATATATGGAGTGGAGCTTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGAATTGGGGTTGGATTCAAACCCAATATATTGGACATGGACATGATGGAAAGAGTTCTTGAGCTACTTCATGTATATGATTTCGCTGACAAAGTCTTCAACACCAGTGTGCTTCCATTGAATCAAGGAGAGAATGGAGTCAAAATGGACTTTGACTGGATGATTGATCACTTTATTGCTTTACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

164

Amino Acids

18.19

Weight (kDa)

5.56

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	3 - 81	6.2e-13	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	24
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	325, 406, 427
AjnI	CCWGG	1 cut(s)	286
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	4 cut(s)	75, 110, 250, 370
AluI	AGCT	4 cut(s)	75, 110, 250, 370
AoxI	GGCC	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	103
BauI	CACGAG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	394
BccI	CCATC	3 cut(s)	40, 136, 346
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	472
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	386
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 138, 145, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	310, 411, 467
Bse21I	CCTNAGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	147, 471
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	102, 245
BseNI	ACTGG	3 cut(s)	310, 411, 467
BshFI	GGCC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	137
BsnI	GGCC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	103, 244
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	310, 411, 467
BssMI	GATC	1 cut(s)	472
BssSI	CACGAG	1 cut(s)	70
Bst2BI	CACGAG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	4 cut(s)	103, 111, 231, 492
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	147, 471
BstKTI	GATC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 107
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	147, 471
BtsIMutI	CAGTG	2 cut(s)	123, 418
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	290
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	5 cut(s)	13, 58, 343, 349, 377
CviJI	RGCY	8 cut(s)	17, 26, 75, 101, 110, 164, 250, 370
CviKI_1	RGCY	8 cut(s)	17, 26, 75, 101, 110, 164, 250, 370
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	4 cut(s)	103, 111, 231, 492
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	286
FaeI	CATG	5 cut(s)	16, 61, 346, 352, 380
FatI	CATG	5 cut(s)	12, 57, 342, 348, 376
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	154, 478
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	26
Hin1II	CATG	5 cut(s)	16, 61, 346, 352, 380
HinfI	GANTC	6 cut(s)	6, 118, 179, 321, 427, 444
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	157, 365
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 107
HpyF3I	CTNAG	4 cut(s)	103, 111, 231, 492
Hsp92II	CATG	5 cut(s)	16, 61, 346, 352, 380
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	3 cut(s)	107, 207, 247
LpnPI	CCDG	6 cut(s)	234, 273, 291, 300, 424, 448
MabI	ACCWGGT	1 cut(s)	286
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	2 cut(s)	96, 394
MluCI	AATT	2 cut(s)	209, 309
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	2 cut(s)	229, 298
MnlI	CCTC	3 cut(s)	140, 141, 303
MroXI	GAANNNNTTC	1 cut(s)	360
MslI	CAYNNNNRTG	3 cut(s)	347, 381, 413
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	23, 107
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	16, 61, 346, 352, 380
OliI	CACNNNNGTG	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	5 cut(s)	6, 118, 179, 321, 427
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	290
PspPPI	RGGWCCY	1 cut(s)	290
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	3 cut(s)	347, 381, 413
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	7 cut(s)	77, 112, 174, 252, 292, 372, 493
SexAI	ACCWGGT	1 cut(s)	286
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	3 cut(s)	347, 381, 413
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	209, 309
SsiI	CCGC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	209, 309
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	5 cut(s)	6, 118, 179, 321, 427
TscAI	CASTG	2 cut(s)	130, 418
TspDTI	ATGAA	2 cut(s)	47, 365
TspRI	CASTG	2 cut(s)	130, 418
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	290
XagI	CCTNNNNNAGG	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.