Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

31491409 .. 31491732

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTGTGTTTTGTTTGGTGATAGAAAAATATTAGAGAAACGAAAAAAAGATGTGGAAGATTTTGATCCAAAACCTTACCTTACAACAGTATTGAACTGTTTGTTATGGTGTTACTATGGATTGCCATTTGTTAATCCAAACAGCATTTTAGTTGTCACCATTAATGGAATTGGGCTAATTATAGAGCTCATATATCTTGTCATATTCTTCTATTATGCTTCATCAAAAGGACGAAGGAGGGTTGCTACATACTTTGTATGTGAACTTGTTTTCTTTGGGCTGCTATGGTCAGAACTATATTGGCAATACCCGAGCATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

107

Amino Acids

12.7

Weight (kDa)

8.69

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 76	7.7e-15	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	29, 148
AvaI	CYCGRG	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	59
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	88, 98
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	267
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	3 cut(s)	175, 187, 280
CviKI_1	RGCY	3 cut(s)	175, 187, 280
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	1 cut(s)	319
FatI	CATG	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	319
HphI	GGTGA	2 cut(s)	29, 148
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	88, 98
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	110, 154
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	68, 199
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	168, 177
MnlI	CCTC	1 cut(s)	231
MseI	TTAA	2 cut(s)	132, 162
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	282
PshBI	ATTAAT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	132, 162
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	3 cut(s)	76, 81, 189
SgeI	CNNG	2 cut(s)	209, 278
Sse9I	AATT	2 cut(s)	168, 177
SspI	AATATT	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	88, 98
TasI	AATT	2 cut(s)	168, 177
Tru1I	TTAA	2 cut(s)	132, 162
Tru9I	TTAA	2 cut(s)	132, 162
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	210
VspI	ATTAAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.