Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

37233717 .. 37235230

Gene Structure 1514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCGATCGTCAAAGGCTCGCCAAATTGCTGGTATCGCTTCAAGAACACGCCCACCGATCCCAAGGATGCGTCGTTCTTTGCCATTGAAACTCCGGAGAGGAAGTTTGTGTCGAGTGTGCAATACATGCCATTCTCACTCTCAGTTGCTAACTTTCTGAATGGTTGTTGCTGGACTTCCTATGCTCTTATTGGAAAAGTTGACTACTTTATTTTGGTTAGCAACGGTCTCGGTTCAATTGCTGGAGCAATTCAATTGATAGTTTATGCAATATACTACAAACCTACACCAAAAAATGAAGACCCTGCTGACAAGGCTACTAATGAAGTGCAACTCGCAACTATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

116

Amino Acids

12.86

Weight (kDa)

7.64

Isoelectric Point (pI)

27.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	39 - 94	1.3e-12	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	94
AclWI	GGATC	1 cut(s)	53
AgsI	TTSAA	4 cut(s)	43, 89, 237, 254
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BcoDI	GTCTC	1 cut(s)	233
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
BseAI	TCCGGA	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	6, 58
BspCNI	CTCAG	1 cut(s)	155
BspEI	TCCGGA	1 cut(s)	94
BspPI	GGATC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	6, 58
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	9, 61
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	6, 58
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 127, 314
BstNSI	RCATGY	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	20
CseI	GACGC	1 cut(s)	60
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	2 cut(s)	18, 317
CviKI_1	RGCY	2 cut(s)	18, 317
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	8, 60
DpnII	GATC	2 cut(s)	6, 58
Eco130I	CCWWGG	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	128, 183, 267, 274
FatI	CATG	1 cut(s)	126
FokI	GGATG	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	264
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	43, 95
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	121, 269, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 127, 314
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	130
Kpn2I	TCCGGA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	6, 58
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	16, 108, 157, 228, 318
LweI	GCATC	1 cut(s)	58
MalI	GATC	2 cut(s)	8, 60
MboI	GATC	2 cut(s)	6, 58
MboII	GAAGA	1 cut(s)	311
MfeI	CAATTG	2 cut(s)	237, 254
MluCI	AATT	4 cut(s)	25, 237, 249, 254
MnlI	CCTC	1 cut(s)	93
MroI	TCCGGA	1 cut(s)	94
MspI	CCGG	1 cut(s)	95
MunI	CAATTG	2 cut(s)	237, 254
MwoI	GCNNNNNNNGC	3 cut(s)	36, 127, 314
NdeII	GATC	2 cut(s)	6, 58
NlaIII	CATG	1 cut(s)	130
NspI	RCATGY	1 cut(s)	130
Ple19I	CGATCG	1 cut(s)	9
PvuI	CGATCG	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	6, 58
SetI	ASST	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	58
Sse9I	AATT	4 cut(s)	25, 237, 249, 254
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	5, 113
TasI	AATT	4 cut(s)	25, 237, 249, 254
TspDTI	ATGAA	2 cut(s)	312, 339
XceI	RCATGY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.