Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

10057942 .. 10058649

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGCATACAGATGCTAGGTTTGTGATAGGTGTGGTTGGAAACATCATCTCTGGCGTAATTTTCCTTTCCCGTATTCCTACGTTTATTCAGTTATGGAGAAAAAAGGATGCGGAAGCTTTCGATCTATCACCCTACCTAATAAACATGTTGCATTGTTTATTTTGGTGTTACTATGGATTGCCATTAGTTACTCCAAACAACATTTTAGTCGTCACTAGCAATGGATTCGGGCTATTCATACAACTCATATATCTTCTCATATACTTCTATTATGCCGCAGCAAACGGAAGAAAGAGGGTTGCCACATACTTTATATGTGAACTTATTTTTTTTGGGGCTGTGGTAGCTGCAACTGTGGTGATGGATCGATTTTGGAGGGCTGTCGTAGTTGGTGTTATGTGTTTGTTCTCAATTTCTCTTATGAATGCACATATCACGGCGTATTGCTCTCCATTATGCGGGGTGATGGATGTCACTCAAATGAACCGTGTGCAGCAATATATGAAACTCTCACTCTTTGTGGCCCACGTCCTAAATAATTGTTGTTGGATTTCCTATGCACTTGTTGGGAAACTGGACTTCGGCATTTTAGCTTGCAACGGCGGCATTGCCATTTTTGGAGCATTCCAATTGATAATTTACATATGTATGCCGGAAGATGATAGCAATGCTCGTGATAAAGTGCATCCCTGCACTACTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

26.41

Weight (kDa)

8.27

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 94	1.7e-17	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	137 - 220	4.9e-10	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	113, 279, 462, 606
AclWI	GGATC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	147
AjiI	CACGTC	1 cut(s)	532
AluBI	AGCT	3 cut(s)	119, 350, 596
AluI	AGCT	3 cut(s)	119, 350, 596
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	3 cut(s)	281, 350, 496
AspS9I	GGNCC	1 cut(s)	526
AsuHPI	GGTGA	3 cut(s)	123, 373, 478
BauI	CACGAG	1 cut(s)	675
BbvI	GCAGC	3 cut(s)	293, 337, 508
BccI	CCATC	2 cut(s)	358, 463
BceAI	ACGGC	2 cut(s)	456, 619
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BfaI	CTAG	3 cut(s)	18, 219, 706
BisI	GCNGC	5 cut(s)	279, 282, 351, 497, 607
BlsI	GCNGC	5 cut(s)	280, 283, 352, 498, 608
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	526
BmsI	GCATC	3 cut(s)	4, 100, 697
Bsa29I	ATCGAT	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	3 cut(s)	229, 609, 676
BseCI	ATCGAT	1 cut(s)	370
BseGI	GGATG	3 cut(s)	115, 478, 688
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	3 cut(s)	229, 609, 676
BseNI	ACTGG	1 cut(s)	582
BseXI	GCAGC	3 cut(s)	293, 337, 508
BsgI	GTGCAG	2 cut(s)	515, 679
BshFI	GGCC	1 cut(s)	527
BshVI	ATCGAT	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmI	GAATGC	2 cut(s)	433, 626
BsnI	GGCC	1 cut(s)	527
Bsp143I	GATC	2 cut(s)	124, 367
BspACI	CCGC	4 cut(s)	113, 279, 462, 606
BspANI	GGCC	1 cut(s)	527
BspDI	ATCGAT	1 cut(s)	370
BspPI	GGATC	1 cut(s)	375
BsrDI	GCAATG	3 cut(s)	229, 609, 676
BsrI	ACTGG	1 cut(s)	582
BssMI	GATC	2 cut(s)	124, 367
BssSI	CACGAG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	675
Bst4CI	ACNGT	3 cut(s)	358, 491, 703
BstC8I	GCNNGC	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	115, 478, 688
BstKTI	GATC	2 cut(s)	127, 370
BstMBI	GATC	2 cut(s)	124, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 606
BstNSI	RCATGY	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	293, 337, 508
Bsu15I	ATCGAT	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	527
BsuTUI	ATCGAT	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	3 cut(s)	115, 478, 688
Cac8I	GCNNGC	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	370
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	7 cut(s)	119, 235, 341, 350, 383, 527, 596
CviKI_1	RGCY	7 cut(s)	119, 235, 341, 350, 383, 527, 596
DpnI	GATC	2 cut(s)	126, 369
DpnII	GATC	2 cut(s)	124, 367
FaeI	CATG	1 cut(s)	151
FatI	CATG	1 cut(s)	147
FauI	CCCGC	1 cut(s)	455
FauNDI	CATATG	1 cut(s)	647
Fnu4HI	GCNGC	5 cut(s)	279, 282, 351, 497, 607
FokI	GGATG	3 cut(s)	122, 485, 675
Fsp4HI	GCNGC	5 cut(s)	279, 282, 351, 497, 607
FspBI	CTAG	3 cut(s)	18, 219, 706
GluI	GCNGC	5 cut(s)	279, 282, 351, 497, 607
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	1 cut(s)	656
Hin1II	CATG	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	3 cut(s)	123, 373, 478
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	358, 491, 703
HpyCH4IV	ACGT	2 cut(s)	83, 531
HpyCH4V	TGCA	9 cut(s)	7, 154, 353, 431, 496, 563, 600, 688, 696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 606
HpySE526I	ACGT	2 cut(s)	83, 531
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	124, 367
LmnI	GCTCC	1 cut(s)	623
LpnPI	CCDG	3 cut(s)	39, 563, 669
Lsp1109I	GCAGC	3 cut(s)	293, 337, 508
LweI	GCATC	3 cut(s)	4, 100, 697
MaeI	CTAG	3 cut(s)	18, 219, 706
MaeII	ACGT	2 cut(s)	83, 531
MaeIII	GTNAC	4 cut(s)	170, 190, 214, 475
MalI	GATC	2 cut(s)	126, 369
MboI	GATC	2 cut(s)	124, 367
MboII	GAAGA	3 cut(s)	248, 303, 671
MfeI	CAATTG	1 cut(s)	632
MluCI	AATT	5 cut(s)	60, 414, 541, 632, 639
MmeI	TCCRAC	2 cut(s)	19, 530
MnlI	CCTC	2 cut(s)	291, 372
MslI	CAYNNNNRTG	3 cut(s)	12, 482, 650
MspI	CCGG	1 cut(s)	656
MunI	CAATTG	1 cut(s)	632
Mva1269I	GAATGC	2 cut(s)	433, 626
MwoI	GCNNNNNNNGC	2 cut(s)	347, 606
NdeI	CATATG	1 cut(s)	647
NdeII	GATC	2 cut(s)	124, 367
NlaIII	CATG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	214, 475
NspI	RCATGY	1 cut(s)	151
PciI	ACATGT	1 cut(s)	147
PctI	GAATGC	2 cut(s)	433, 626
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	280, 283, 352, 498, 608
PscI	ACATGT	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	526
RseI	CAYNNNNRTG	3 cut(s)	12, 482, 650
SatI	GCNGC	5 cut(s)	279, 282, 351, 497, 607
Sau3AI	GATC	2 cut(s)	124, 367
Sau96I	GGNCC	1 cut(s)	526
SetI	ASST	8 cut(s)	23, 34, 86, 121, 141, 352, 534, 598
SfaNI	GCATC	3 cut(s)	4, 100, 697
SmiMI	CAYNNNNRTG	3 cut(s)	12, 482, 650
Sse9I	AATT	5 cut(s)	60, 414, 541, 632, 639
SsiI	CCGC	4 cut(s)	113, 279, 462, 606
SspMI	CTAG	3 cut(s)	18, 219, 706
TaaI	ACNGT	3 cut(s)	358, 491, 703
TaiI	ACGT	2 cut(s)	86, 534
TaqI	TCGA	2 cut(s)	123, 370
TasI	AATT	5 cut(s)	60, 414, 541, 632, 639
TauI	GCSGC	2 cut(s)	281, 609
TfiI	GAWTC	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	214, 475
TseI	GCWGC	3 cut(s)	281, 350, 496
Tsp45I	GTSAC	2 cut(s)	214, 475
TspDTI	ATGAA	4 cut(s)	229, 440, 500, 521
TspGWI	ACGGA	1 cut(s)	303
XceI	RCATGY	1 cut(s)	151
XspI	CTAG	3 cut(s)	18, 219, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.