Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

84804786 .. 84806474

Gene Structure 1689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53856

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGAAATGTCATCTCTGCCGGGCTTTTTCTTTCCCCAGTTCCTACGTTCTTACAAATATGGAGAAAGAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTGCTACAGTGTTAAACTGTTTGTTTTGGTGTTATTACGGAATGCCATTCGTCAATCCAAACAGTATTTTAGTTGTCACCATTAATGGAGCTGGGCTAGTAATAGAGCTTATATATCTTGCTATATTCTTCCTTTATGCTCCAGCAAAAGGACGGAAAAAGGTTACCACATTCTTAGTAGGTGAATTTGTTTTCTTTGCGGCTATTGTGGTTGCAACTATGTTGACAATATCTGAGCATAAGATGATGATGAATCGACCTCTGCGGGCTGTCGTAGTTGGTATTATCTGTGATGTTTTCAATGTTATCATGTATAGCTCTCCTCTGTTCATTCTGAAAAAAGTCATCAAAACGAAGAGTGTGAAATACATGCCATTCCTTCTCTCATTGGCCAATTTTCTGAATGGTTGTTGTTGGACTGCATATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCATTTGCTGGAGCAATTCAATTGATAGTGTATGCAATATTCTACAAAACTACACCAAAAGAAGACCCTTCTAGCAAGCCTACTAATGAAGTGCAACTTTCTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

230

Amino Acids

25.62

Weight (kDa)

9.32

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	2 - 84	3.3e-20	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	126 - 209	1.7e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	302, 367
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	403, 599
AluBI	AGCT	4 cut(s)	83, 194, 211, 420
AluI	AGCT	4 cut(s)	83, 194, 211, 420
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	492
ApoI	RAATTY	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	172, 296
BalI	TGGCCA	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	648
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	2 cut(s)	200, 651
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	2 cut(s)	228, 609
BpuMI	CCSGG	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	194
BshFI	GGCC	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	578
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	2 cut(s)	302, 367
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	88
Bst4CI	ACNGT	4 cut(s)	112, 122, 167, 572
Bst6I	CTCTTC	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	369, 656
BstDEI	CTNAG	2 cut(s)	277, 336
BstEII	GGTNACC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	475
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	369, 656
CviAII	CATG	2 cut(s)	412, 472
DdeI	CTNAG	2 cut(s)	277, 336
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	578
Eco91I	GGTNACC	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	265
FaeI	CATG	2 cut(s)	415, 475
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FatI	CATG	2 cut(s)	411, 471
FauI	CCCGC	1 cut(s)	360
FauNDI	CATATG	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	200, 651
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	2 cut(s)	228, 609
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	2 cut(s)	415, 475
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	172, 296
Hpy166II	GTNNAC	2 cut(s)	327, 547
Hpy188I	TCNGA	3 cut(s)	337, 438, 504
Hpy8I	GTNNAC	2 cut(s)	327, 547
HpyAV	CCTTC	2 cut(s)	491, 657
HpyCH4III	ACNGT	4 cut(s)	112, 122, 167, 572
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	317, 524, 581, 614, 673
HpyF3I	CTNAG	2 cut(s)	277, 336
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	415, 475
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	191, 247, 590
LpnPI	CCDG	5 cut(s)	34, 51, 180, 258, 573
MaeI	CTAG	2 cut(s)	200, 651
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	178, 265
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	3 cut(s)	223, 469, 653
MfeI	CAATTG	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	4 cut(s)	287, 496, 594, 599
MluNI	TGGCCA	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	2 cut(s)	372, 435
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	2 cut(s)	116, 186
Msp20I	TGGCCA	1 cut(s)	494
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	415, 475
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	475
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	186
PspEI	GGTNACC	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	116, 186
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	287, 496, 594, 599
SsiI	CCGC	2 cut(s)	302, 367
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	2 cut(s)	200, 651
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	4 cut(s)	112, 122, 167, 572
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	87, 358
TasI	AATT	4 cut(s)	287, 496, 594, 599
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	2 cut(s)	116, 186
Tru9I	TTAA	2 cut(s)	116, 186
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	4 cut(s)	368, 421, 544, 681
TspGWI	ACGGA	2 cut(s)	156, 271
TspRI	CASTG	1 cut(s)	117
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	475
XspI	CTAG	2 cut(s)	200, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.