Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

64814343 .. 64814619

Gene Structure 277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCTAGGTTCTGAAATATGGAGAAAAAGAGATGTGGAATCTTTTGATGCAAAACCTTACCTTACGACACTGTTGAACTATTTGTTATGGTGTTACTACGGGTTGCCATTTGTTAATCCTAACAACATTTTAGTTGTCACCATTAATGGAATTGGGCTAATTATAGAGCTCATATATCTTGGCATATCTTTTTTTTTTTTTTTTAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

70

Amino Acids

8.24

Weight (kDa)

6.04

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	5 - 62	6.2e-12	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	171
AseI	ATTAAT	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	5
BmsI	GCATC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	68
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	2 cut(s)	157, 169
CviKI_1	RGCY	2 cut(s)	157, 169
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	1 cut(s)	213
FaiI	YATR	7 cut(s)	19, 88, 164, 173, 175, 185, 211
FatI	CATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	213
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	213
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	92, 136
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	150, 159
MseI	TTAA	2 cut(s)	114, 144
NlaIII	CATG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	114, 144
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	4 cut(s)	10, 58, 63, 171
SfaNI	GCATC	1 cut(s)	37
SgeI	CNNG	3 cut(s)	17, 112, 191
Sse9I	AATT	2 cut(s)	150, 159
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	72
TasI	AATT	2 cut(s)	150, 159
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	114, 144
Tru9I	TTAA	2 cut(s)	114, 144
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspRI	CASTG	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	144
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.