Rw1G018790

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
41331329 .. 41332644
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018790.1

Sequence Viewer

Length: 711 bp
ATGAAGTTCAAATTTGTAAATCCTACTTTGTATAGGAGTTGCGCGCAGGAGTTCGTGGTCGGTGTGGTTGGAAACGTGATCTCTGGTGGCCTTTTCCTCTCCCCAATTCCTACTTTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTACAACAGTGTTGAACTGTTTGTTCTGGTGTTACTACGGATTGCCATTCGTTAATCCAAACAGCATTTTAGTTGTCACTATTAATGGAATTGGGCTATTTATAGAGCTCATATATCTTATCATATTCTTCTATTATGCCACAACAAAAGGACGAAAGAGGGTTGTTACATACTTTATATGCGAACTTACTTTATTTGGGGCTCTGATGGTGATGAATCGACATTTGAGGGCTGTCATAGTTGGTGTGATCTGTGATTTTTTCAATGTTCTTATGTATGGCTCTCCTTTGTTCAACCTGAGAGATGTCATTAAAACTAAGAGTGTGAAATATATGCCATTCACTCTCTTAGTGGCGAACTTCCTGAATGGTTGTTGCTGGACATCCTATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTTTTGGAGCACTTCAATTGATAGTTTATGCAAGATACTATAGAACTACACCAAAAGATGAGACTACAAATGAAGTGCAGCTTTGTACTAATGTCTAA

Protein Analysis

236

Amino Acids

26.91

Weight (kDa)

9.15

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 19 - 106 5.7e-22 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 136 - 219 2.5e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 1 cut(s) 700
AgsI TTSAA 5 cut(s) 10, 184, 433, 463, 629
AluBI AGCT 3 cut(s) 149, 277, 694
AluI AGCT 3 cut(s) 149, 277, 694
Alw21I GWGCWC 2 cut(s) 279, 625
Alw26I GTCTC 2 cut(s) 608, 668
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 691
ApoI RAATTY 1 cut(s) 11
AseI ATTAAT 1 cut(s) 252
AspLEI GCGC 2 cut(s) 44, 46
AsuHPI GGTGA 1 cut(s) 391
BanII GRGCYC 2 cut(s) 279, 373
Bbv12I GWGCWC 2 cut(s) 279, 625
BbvI GCAGC 1 cut(s) 703
BccI CCATC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BcoDI GTCTC 2 cut(s) 608, 668
BfmI CTRYAG 1 cut(s) 652
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 608
BseGI GGATG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 458
BsePI GCGCGC 1 cut(s) 42
BseXI GCAGC 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 279, 625
BsmAI GTCTC 2 cut(s) 608, 668
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 608
Bsp1286I GDGCHC 3 cut(s) 279, 373, 625
Bsp143I GATC 3 cut(s) 78, 154, 417
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 459
BspFNI CGCG 1 cut(s) 44
BspPI GGATC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 608
BssHII GCGCGC 1 cut(s) 42
BssMI GATC 3 cut(s) 78, 154, 417
Bst4CI ACNGT 3 cut(s) 178, 188, 602
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 3 cut(s) 467, 486, 517
BstF5I GGATG 1 cut(s) 551
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 2 cut(s) 44, 46
BstKTI GATC 3 cut(s) 81, 157, 420
BstMAI GTCTC 2 cut(s) 608, 668
BstMBI GATC 3 cut(s) 78, 154, 417
BstSFI CTRYAG 1 cut(s) 652
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 703
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 2 cut(s) 44, 46
Csp6I GTAC 1 cut(s) 699
CviJI RGCY 8 cut(s) 90, 149, 265, 277, 371, 401, 450, 694
CviKI_1 RGCY 8 cut(s) 90, 149, 265, 277, 371, 401, 450, 694
CviQI GTAC 1 cut(s) 699
DdeI CTNAG 3 cut(s) 467, 486, 517
DpnI GATC 3 cut(s) 80, 156, 419
DpnII GATC 3 cut(s) 78, 154, 417
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 2 cut(s) 279, 373
Eco31I GGTCTC 1 cut(s) 608
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoT38I GRGCYC 2 cut(s) 279, 373
FalI AAGNNNNNCTT 2 cut(s) 678, 710
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 1 cut(s) 538
FriOI GRGCYC 2 cut(s) 279, 373
Fsp4HI GCNGC 1 cut(s) 692
GlaI GCGC 2 cut(s) 43, 45
GluI GCNGC 1 cut(s) 692
HaeIII GGCC 1 cut(s) 90
HhaI GCGC 2 cut(s) 44, 46
Hin6I GCGC 2 cut(s) 42, 44
HinP1I GCGC 2 cut(s) 42, 44
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 385
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 1 cut(s) 532
Hpy8I GTNNAC 1 cut(s) 577
HpyCH4III ACNGT 3 cut(s) 178, 188, 602
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 611, 644, 691
HpyF3I CTNAG 3 cut(s) 467, 486, 517
HpySE526I ACGT 1 cut(s) 75
HspAI GCGC 2 cut(s) 42, 44
Kzo9I GATC 3 cut(s) 78, 154, 417
LmnI GCTCC 1 cut(s) 620
LpnPI CCDG 6 cut(s) 32, 69, 181, 479, 532, 545
Lsp1109I GCAGC 1 cut(s) 703
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 200, 244, 334
MalI GATC 3 cut(s) 80, 156, 419
MboI GATC 3 cut(s) 78, 154, 417
MboII GAAGA 1 cut(s) 289
MfeI CAATTG 1 cut(s) 629
MhlI GDGCHC 3 cut(s) 279, 373, 625
MluCI AATT 5 cut(s) 11, 105, 258, 612, 629
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 3 cut(s) 107, 321, 390
MseI TTAA 3 cut(s) 222, 252, 480
MunI CAATTG 1 cut(s) 629
MvnI CGCG 1 cut(s) 44
NdeII GATC 3 cut(s) 78, 154, 417
NmuCI GTSAC 1 cut(s) 244
PauI GCGCGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 1 cut(s) 693
PshBI ATTAAT 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 279
PteI GCGCGC 1 cut(s) 42
RsaI GTAC 1 cut(s) 700
RsaNI GTAC 1 cut(s) 699
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 222, 252, 480
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 3 cut(s) 78, 154, 417
SduI GDGCHC 3 cut(s) 279, 373, 625
SetI ASST 7 cut(s) 78, 151, 166, 171, 279, 468, 696
SfcI CTRYAG 1 cut(s) 652
Sse9I AATT 5 cut(s) 11, 105, 258, 612, 629
SstI GAGCTC 1 cut(s) 279
TaaI ACNGT 3 cut(s) 178, 188, 602
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 153, 388
TasI AATT 5 cut(s) 11, 105, 258, 612, 629
TatI WGTACW 1 cut(s) 698
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 3 cut(s) 222, 252, 480
Tru9I TTAA 3 cut(s) 222, 252, 480
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 5 cut(s) 17, 106, 398, 574, 699
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 183
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.