Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

45710675 .. 45711407

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTGCACACAGATGCTAGGTTCTTGGTTGGTGTGGTTGGGAATGTCATCTCTAGCGGTCTTTTCCTCTCCCCAATTCCTACATTCTGTTACTACGGATTGCCAGTCATTAACCCAAATAGCATTTTAGTTGTCACTATTAATAGAATTGGGCTATTTATGGAGCTCATGTATATGATCATATTCTTCTATTATGCTGCAGCAAAAGGACGAAAGAGGGTTGCTACATACTTTATATGTGAACTTATTTTATTTGGGGCTTTGGTGGCTGCAACTATGGTTGTCGTAGTTGGTGTGATCTGTGATTTTTTCAATGTCCTCATGTATGACTCTCCATTGTTCAACGTGAGAGATGTCATTAAAACTAAGAGTGTGAAATATATGCCATTCACTCTCCTAATGGCCAACTTCTTGAATGGTTGTTGCTGGACATCCTATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCACCGGTCTTGGTGCAATTTTTGGAGTATTTCAATTGATAATTTATGCAATATATTACAAAACTACACCAAAAGACGAAGACCTCTCTGGCAAGACTACTAATGACGTGCAACTTTGTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

201

Amino Acids

22.46

Weight (kDa)

8.48

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	96 - 180	1e-20	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	402
AfaI	GTAC	1 cut(s)	595
AgeI	ACCGGT	1 cut(s)	479
AgsI	TTSAA	4 cut(s)	313, 343, 415, 509
AjiI	CACGTC	1 cut(s)	583
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	2 cut(s)	9, 168
Alw44I	GTGCAC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	402
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	197, 200, 269
AseI	ATTAAT	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	9, 168
BbvI	GCAGC	3 cut(s)	184, 212, 256
BclI	TGATCA	1 cut(s)	177
BfaI	CTAG	2 cut(s)	18, 54
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	3 cut(s)	198, 201, 270
BlsI	GCNGC	3 cut(s)	199, 202, 271
BmgBI	CACGTC	1 cut(s)	583
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	184, 212, 256
BshFI	GGCC	1 cut(s)	404
BshTI	ACCGGT	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	9, 168
BsiSI	CCGG	1 cut(s)	480
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	9, 168
Bsp143I	GATC	2 cut(s)	177, 297
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	404
BspMAI	CTGCAG	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	479
BssMI	GATC	2 cut(s)	177, 297
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	431
BstKTI	GATC	2 cut(s)	180, 300
BstMBI	GATC	2 cut(s)	177, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	184, 212, 256
BstV2I	GAAGAC	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	404
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	594
CspAI	ACCGGT	1 cut(s)	479
CviAII	CATG	2 cut(s)	169, 322
CviJI	RGCY	5 cut(s)	154, 166, 260, 269, 404
CviKI_1	RGCY	5 cut(s)	154, 166, 260, 269, 404
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	179, 299
DpnII	GATC	2 cut(s)	177, 297
EaeI	YGGCCR	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	2 cut(s)	172, 325
FatI	CATG	2 cut(s)	168, 321
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	198, 201, 270
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	198, 201, 270
FspBI	CTAG	2 cut(s)	18, 54
GluI	GCNGC	3 cut(s)	198, 201, 270
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	480
Hin1II	CATG	2 cut(s)	172, 325
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	480
Hpy166II	GTNNAC	3 cut(s)	7, 242, 457
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	3 cut(s)	7, 242, 457
HpyCH4IV	ACGT	2 cut(s)	345, 582
HpyCH4V	TGCA	6 cut(s)	7, 200, 272, 491, 524, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	2 cut(s)	345, 582
Hsp92II	CATG	2 cut(s)	172, 325
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 297
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	117, 412, 493, 549
Lsp1109I	GCAGC	3 cut(s)	184, 212, 256
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	18, 54
MaeII	ACGT	2 cut(s)	345, 582
MaeIII	GTNAC	2 cut(s)	89, 133
MalI	GATC	2 cut(s)	179, 299
MboI	GATC	2 cut(s)	177, 297
MboII	GAAGA	2 cut(s)	178, 566
MfeI	CAATTG	1 cut(s)	509
MhlI	GDGCHC	2 cut(s)	9, 168
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	5 cut(s)	75, 147, 492, 509, 516
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	77, 210, 329, 569
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	3 cut(s)	111, 141, 360
MslI	CAYNNNNRTG	2 cut(s)	12, 173
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	2 cut(s)	177, 297
NlaIII	CATG	2 cut(s)	172, 325
NmuCI	GTSAC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	199, 202, 271
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	2 cut(s)	12, 173
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	111, 141, 360
SatI	GCNGC	3 cut(s)	198, 201, 270
Sau3AI	GATC	2 cut(s)	177, 297
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	9, 168
SetI	ASST	5 cut(s)	23, 168, 348, 561, 585
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	2 cut(s)	12, 173
Sse9I	AATT	5 cut(s)	75, 147, 492, 509, 516
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	2 cut(s)	18, 54
SstI	GAGCTC	1 cut(s)	168
TaiI	ACGT	2 cut(s)	348, 585
TasI	AATT	5 cut(s)	75, 147, 492, 509, 516
TatI	WGTACW	1 cut(s)	593
Tru1I	TTAA	3 cut(s)	111, 141, 360
Tru9I	TTAA	3 cut(s)	111, 141, 360
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	197, 200, 269
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	141
XspI	CTAG	2 cut(s)	18, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.