Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

38431725 .. 38432605

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0272100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGACTCAAACATATGATCTAGCTGAAGTATGTGTCGAAACAAACTACTATGGTGCAAAGAAAGTTACCAAAGCATTCCTTCCTCTCCTCCGTCTATCTGATTCACCAAGAATGTCAGTCTTACTTCTGGCATGGGGACATTACAGCCTTAAGCCTTGCAACCAAAGCTACAATCATATACCAAATGAATGGGCCAAAGTGGTGTTAAGTGATGCCGAAAACGTTACAGAAGAGAAAGTAGAGGAGGTCTTAAGTGAGTTTCTAAAGGACTTCAAAGAAGATATGCTTGAAACCAAAGGCTGGCCTCCTACCCCCTCTACCTATACACTCTCAAAGGCAGCCTTGAATGCATACACCAGAATTGTGGCCAAGAAGTACCCGAAGGTATGCGTCAATTGTGTTGATCCTGGATTTGTTAAAACATATATGACCTGCAATGCCGGCATCTTATCCATCGATGATGCTACAAGTGTTGTTAGGTTGGCAATGGCTCCAAATGGTAGTCCTTCAGGTCTATACTTCTATGTACAAGAAGTCTCACCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

182

Amino Acids

20.37

Weight (kDa)

5.73

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	99 - 146	5.3e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	300
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	366
AcuI	CTGAAG	2 cut(s)	45, 492
AfaI	GTAC	2 cut(s)	377, 528
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflII	CTTAAG	2 cut(s)	149, 250
AgsI	TTSAA	3 cut(s)	274, 290, 346
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	2 cut(s)	23, 168
AluI	AGCT	2 cut(s)	23, 168
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	3 cut(s)	192, 302, 366
ApeKI	GCWGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	96, 531
BalI	TGGCCA	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	20
BfrI	CTTAAG	2 cut(s)	149, 250
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	3 cut(s)	202, 451, 453
Bsa29I	ATCGAT	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	440
Bse3DI	GCAATG	2 cut(s)	442, 492
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	2 cut(s)	442, 492
BseRI	GAGGAG	2 cut(s)	77, 257
BseXI	GCAGC	1 cut(s)	350
BshFI	GGCC	3 cut(s)	194, 304, 368
BshVI	ATCGAT	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	2 cut(s)	74, 352
BsnI	GGCC	3 cut(s)	194, 304, 368
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	16, 403
BspANI	GGCC	3 cut(s)	194, 304, 368
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	398
BspTI	CTTAAG	2 cut(s)	149, 250
BsrDI	GCAATG	2 cut(s)	442, 492
BsrFI	RCCGGY	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	440
BssMI	GATC	2 cut(s)	16, 403
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	2 cut(s)	149, 250
BstAUI	TGTACA	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	302, 442
BstKTI	GATC	2 cut(s)	19, 406
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	2 cut(s)	16, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 347, 441
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	350
BstXI	CCANNNNNNTGG	2 cut(s)	189, 364
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	194, 304, 368
BsuTUI	ATCGAT	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	302, 442
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	376, 527
CviAII	CATG	1 cut(s)	132
CviQI	GTAC	2 cut(s)	376, 527
DpnI	GATC	2 cut(s)	18, 405
DpnII	GATC	2 cut(s)	16, 403
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	45, 492
EcoRII	CCWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	352
FaeI	CATG	1 cut(s)	135
FalI	AAGNNNNNCTT	6 cut(s)	63, 95, 270, 302, 326, 358
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	1 cut(s)	131
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	339
HaeIII	GGCC	3 cut(s)	194, 304, 368
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	379
Hin1II	CATG	1 cut(s)	135
HinfI	GANTC	2 cut(s)	4, 101
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	2 cut(s)	96, 531
Hpy188I	TCNGA	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	89, 376, 516
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	56, 159, 350, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 347, 441
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	135
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	16, 403
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	8 cut(s)	113, 286, 370, 393, 420, 445, 454, 495
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	3 cut(s)	202, 451, 453
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	64, 223
MalI	GATC	2 cut(s)	18, 405
MboI	GATC	2 cut(s)	16, 403
MboII	GAAGA	2 cut(s)	242, 290
MfeI	CAATTG	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	2 cut(s)	360, 394
MluNI	TGGCCA	1 cut(s)	368
MnlI	CCTC	6 cut(s)	93, 98, 235, 238, 315, 325
Mox20I	TGGCCA	1 cut(s)	368
Mph1103I	ATGCAT	1 cut(s)	352
MroNI	GCCGGC	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	5 cut(s)	150, 206, 251, 417, 547
Msp20I	TGGCCA	1 cut(s)	368
MspCI	CTTAAG	2 cut(s)	149, 250
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	2 cut(s)	74, 352
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	165, 347, 441
NaeI	GCCGGC	1 cut(s)	442
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	2 cut(s)	16, 403
NgoMIV	GCCGGC	1 cut(s)	440
NlaIII	CATG	1 cut(s)	135
NlaIV	GGNNCC	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	352
PctI	GAATGC	2 cut(s)	74, 352
PdiI	GCCGGC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	300
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	340
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	192
RsaI	GTAC	2 cut(s)	377, 528
RsaNI	GTAC	2 cut(s)	376, 527
SaqAI	TTAA	5 cut(s)	150, 206, 251, 417, 547
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	16, 403
Sau96I	GGNCC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	9 cut(s)	25, 170, 225, 249, 323, 387, 434, 482, 514
SfaNI	GCATC	3 cut(s)	202, 451, 453
SmlI	CTYRAG	2 cut(s)	149, 250
SmoI	CTYRAG	2 cut(s)	149, 250
Sse9I	AATT	2 cut(s)	360, 394
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	406
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	36, 456
TasI	AATT	2 cut(s)	360, 394
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	5 cut(s)	150, 206, 251, 417, 547
Tru9I	TTAA	5 cut(s)	150, 206, 251, 417, 547
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	300
Vha464I	CTTAAG	2 cut(s)	149, 250
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.