Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

51487068 .. 51487364

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58460

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTGCACACAGATGCAAGGTTTGTGGTTGGTGTGGTTGGGAATGTCATCTATGGCGGCCTTTTTCTCTCCCCAATTCCTACATTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTACAACAGTGTTAAACTGTTTGTTCTGGTATTACTACGGATTGCCATTCATTAACCCAAACAAGATTTTAGTTGTCACTATTAATGGAATTGGATTATTTATAGAGCTTATATACCTTATTATATTCTTCTATTATGCCGCATCAAAAGGACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

98

Amino Acids

11.29

Weight (kDa)

9.1

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 96	1.2e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 279
AclWI	GGATC	1 cut(s)	119
AluBI	AGCT	2 cut(s)	119, 247
AluI	AGCT	2 cut(s)	119, 247
Alw21I	GWGCWC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	58
ApaLI	GTGCAC	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BisI	GCNGC	2 cut(s)	58, 279
BlsI	GCNGC	2 cut(s)	59, 280
BmsI	GCATC	2 cut(s)	4, 290
BseSI	GKGCMC	1 cut(s)	9
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	57, 279
BspANI	GGCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	119
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	148, 158
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviJI	RGCY	3 cut(s)	60, 119, 247
CviKI_1	RGCY	3 cut(s)	60, 119, 247
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
FaiI	YATR	8 cut(s)	54, 89, 97, 242, 251, 253, 263, 276
Fnu4HI	GCNGC	2 cut(s)	58, 279
Fsp4HI	GCNGC	2 cut(s)	58, 279
GluI	GCNGC	2 cut(s)	58, 279
HaeIII	GGCC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	148, 158
HpyCH4V	TGCA	2 cut(s)	7, 17
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	1 cut(s)	151
LweI	GCATC	2 cut(s)	4, 290
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	75, 228
MseI	TTAA	3 cut(s)	152, 192, 222
MslI	CAYNNNNRTG	1 cut(s)	12
NdeII	GATC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	59, 280
PshBI	ATTAAT	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	152, 192, 222
SatI	GCNGC	2 cut(s)	58, 279
Sau3AI	GATC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	6 cut(s)	23, 121, 136, 141, 249, 258
SfaNI	GCATC	2 cut(s)	4, 290
SgeI	CNNG	3 cut(s)	30, 178, 214
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	75, 228
SsiI	CCGC	2 cut(s)	57, 279
TaaI	ACNGT	2 cut(s)	148, 158
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	75, 228
TauI	GCSGC	2 cut(s)	60, 281
Tru1I	TTAA	3 cut(s)	152, 192, 222
Tru9I	TTAA	3 cut(s)	152, 192, 222
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	76, 178
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.