Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

9158336 .. 9161293

Gene Structure 2958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0104200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGGTCGTCGTCAGCTCAACGAGAGCTTCAGCGCGAATTGGAAGCCAAAGCTAACGATCTCAGCAAAATCCAAAAGGACATTTCAAAGAATCATCAAGTGAGAAAGAAGTACACCATTCAGCTCGGCGAGAACGAGCTCGTCCTTAAGGAATTGGATCTGCTGAGCGAAGACGCCAATGTGTTCAAATTGATCGGTCCGGTTCTCGTGAAGCAGGATTTGGCAGAGGCCAGGGCCAATGTGCGCAAGAGAATTGAGTACATTTCCGCGGAACTGAAGCGGCTGGATGCTACTCTTCAAGATATGGAAGAGAAGCAAAATAGCAAGAAAGAAGCGATTTTTAAAGTACAACAGAGGGTTCAATCTCTCCAGGCTGGAAAAGCAAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

9.42

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin_2	PF01920	16 - 118	1.6e-22	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AccII	CGCG	2 cut(s)	36, 269
AciI	CCGC	3 cut(s)	267, 269, 280
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	14, 296
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	3 cut(s)	113, 260, 348
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	87, 187, 299, 362
AjnI	CCWGG	2 cut(s)	230, 369
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	5 cut(s)	17, 28, 53, 124, 139
AluI	AGCT	5 cut(s)	17, 28, 53, 124, 139
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	228, 234
AspLEI	GCGC	2 cut(s)	36, 246
AspS9I	GGNCC	2 cut(s)	197, 234
AvaII	GGWCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	232, 371
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	281
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	2 cut(s)	232, 371
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	197, 234
BmrFI	CCNGG	2 cut(s)	232, 371
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	231, 267
BsaWI	WCCGGW	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	232, 371
BseDI	CCNNGG	2 cut(s)	231, 267
BseGI	GGATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	76, 155
Bsh1236I	CGCG	2 cut(s)	36, 269
BshFI	GGCC	2 cut(s)	230, 236
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	200
BsnI	GGCC	2 cut(s)	230, 236
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	58, 157, 192
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	3 cut(s)	267, 269, 280
BspANI	GGCC	2 cut(s)	230, 236
BspCNI	CTCAG	2 cut(s)	75, 156
BspFNI	CGCG	2 cut(s)	36, 269
BspPI	GGATC	1 cut(s)	165
BspTI	CTTAAG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	231, 267
BssMI	GATC	3 cut(s)	58, 157, 192
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	232, 371
Bst6I	CTCTTC	2 cut(s)	300, 303
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	62, 164
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	2 cut(s)	36, 269
BstHHI	GCGC	2 cut(s)	36, 246
BstKTI	GATC	3 cut(s)	61, 160, 195
BstMBI	GATC	3 cut(s)	58, 157, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	2 cut(s)	232, 371
BstSCI	CCNGG	2 cut(s)	230, 369
BstUI	CGCG	2 cut(s)	36, 269
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	230, 236
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	292
CfoI	GCGC	2 cut(s)	36, 246
Cfr13I	GGNCC	2 cut(s)	197, 234
Cfr42I	CCGCGG	1 cut(s)	270
CpoI	CGGWCCG	1 cut(s)	197
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	112, 259, 347
CspI	CGGWCCG	1 cut(s)	197
CviQI	GTAC	3 cut(s)	112, 259, 347
DdeI	CTNAG	2 cut(s)	62, 164
DpnI	GATC	3 cut(s)	60, 159, 194
DpnII	GATC	3 cut(s)	58, 157, 192
DraI	TTTAAA	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	300, 303
EarI	CTCTTC	2 cut(s)	300, 303
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	14, 296
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	230, 369
EcoT38I	GRGCYC	1 cut(s)	141
FaiI	YATR	2 cut(s)	305, 391
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	281
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	2 cut(s)	35, 245
GluI	GCNGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	230, 236
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	36, 246
Hin1I	GRCGYC	1 cut(s)	174
Hin6I	GCGC	2 cut(s)	34, 244
HinP1I	GCGC	2 cut(s)	34, 244
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	208, 299
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	62, 164
Hsp92I	GRCGYC	1 cut(s)	174
HspAI	GCGC	2 cut(s)	34, 244
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	58, 157, 192
LpnPI	CCDG	8 cut(s)	200, 213, 217, 244, 269, 356, 360, 383
LweI	GCATC	1 cut(s)	277
MalI	GATC	3 cut(s)	60, 159, 194
MboI	GATC	3 cut(s)	58, 157, 192
MboII	GAAGA	3 cut(s)	182, 287, 320
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	4 cut(s)	38, 152, 188, 252
MnlI	CCTC	2 cut(s)	220, 348
MseI	TTAA	2 cut(s)	147, 342
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	232, 371
MvaI	CCWGG	2 cut(s)	232, 371
MvnI	CGCG	2 cut(s)	36, 269
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	3 cut(s)	58, 157, 192
NmeAIII	GCCGAG	1 cut(s)	105
NsbI	TGCGCA	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	230, 369
PspGI	CCWGG	2 cut(s)	230, 369
PspPI	GGNCC	2 cut(s)	197, 234
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	113, 260, 348
RsaNI	GTAC	3 cut(s)	112, 259, 347
Rsr2I	CGGWCCG	1 cut(s)	197
RsrII	CGGWCCG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	141
SacII	CCGCGG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	147, 342
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	58, 157, 192
Sau96I	GGNCC	2 cut(s)	197, 234
ScrFI	CCNGG	2 cut(s)	232, 371
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	19, 30, 55, 126, 141
SfaNI	GCATC	1 cut(s)	277
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	38, 152, 188, 252
SsiI	CCGC	3 cut(s)	267, 269, 280
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	230, 369
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	38, 152, 188, 252
TatI	WGTACW	3 cut(s)	111, 258, 346
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	147, 342
Tru9I	TTAA	2 cut(s)	147, 342
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.