Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

67344270 .. 67344644

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG498900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTGGCAATACCTGAGCATAAGATGAAGATAAATCGACATTTGAGGGCTGTTGTAGTTGGTTCTATCTGTGATTTTTTCAATGTCCTCATGTATATCTCTCCTCTGTTCATCATGAGTGAAGTCATCAAAACAAAAAGTGTGAAATATATGCCATTCACGCTCTCAATTGCCAACTTTCTGAATGGTTGTTGTCGGACTTCCTATGCTCTTGTTGGAAAAATGGATTACTTTATTTTGGTTAGCAACGGTCTTGGTGCAATTGCTGGAGCAGTTCAATTGATAGTTTATGCAATATACTACAAAACTACACCAAAAGATGAAGACCTTTATGACAAGCCTACTAATGAAGTGCAACTCTCAAGCATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

124

Amino Acids

13.94

Weight (kDa)

8.76

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	19 - 103	7.8e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	82, 278
BbsI	GAAGAC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	114
CviAII	CATG	3 cut(s)	91, 115, 367
CviJI	RGCY	2 cut(s)	50, 340
CviKI_1	RGCY	2 cut(s)	50, 340
DdeI	CTNAG	1 cut(s)	15
FaeI	CATG	3 cut(s)	94, 118, 370
FatI	CATG	3 cut(s)	90, 114, 366
GsuI	CTGGAG	1 cut(s)	288
Hin1II	CATG	3 cut(s)	94, 118, 370
Hpy188I	TCNGA	2 cut(s)	183, 198
Hpy188III	TCNNGA	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	260, 293, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	94, 118, 370
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	2 cut(s)	27, 252
MboII	GAAGA	2 cut(s)	40, 335
MfeI	CAATTG	3 cut(s)	168, 261, 278
MluCI	AATT	3 cut(s)	168, 261, 278
MmeI	TCCRAC	2 cut(s)	176, 196
MnlI	CCTC	3 cut(s)	39, 98, 114
MunI	CAATTG	3 cut(s)	168, 261, 278
MwoI	GCNNNNNNNGC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	94, 118, 370
PagI	TCATGA	1 cut(s)	114
SetI	ASST	2 cut(s)	16, 330
SgeI	CNNG	8 cut(s)	26, 103, 127, 172, 224, 266, 279, 349
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	3 cut(s)	168, 261, 278
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	168, 261, 278
TspDTI	ATGAA	4 cut(s)	41, 100, 336, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.