Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

51281298 .. 51281648

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCGCTGAATCGACCTTTGAGGGCTGTTGTAGTTGGTGTGATATGTGATTTTTTCAATGTCCTCATGTATGGCTCTCCTTTGTTCAACGTGCGAGATGTCATTAAAACTCAAAGTGTGAAATATATGTCATTCACTCTCCTAGTGGCCAACTTCCTGAATGGTTGTTGTTGGACATCCTATGCTCTCATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTTGGCGCAATTTTTGGGGCATTTCAATTGATAGTTTATGCAAGATACTACAAAACTACACCAAAAGATGAAGACCTCTCTGGCAAGACTACTAATGAAGTGCAACTCTGTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

116

Amino Acids

12.98

Weight (kDa)

8.72

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 95	1.2e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	58, 88, 254
AoxI	GGCC	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	7, 236
BalI	TGGCCA	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	306
BseGI	GGATG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 236
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	176
CfoI	GCGC	2 cut(s)	7, 236
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	3 cut(s)	26, 75, 149
CviKI_1	RGCY	3 cut(s)	26, 75, 149
CviQI	GTAC	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	147
FaeI	CATG	1 cut(s)	70
FaiI	YATR	7 cut(s)	46, 68, 72, 126, 128, 183, 267
FatI	CATG	1 cut(s)	66
FokI	GGATG	1 cut(s)	163
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	2 cut(s)	6, 235
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	7, 236
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	2 cut(s)	5, 234
HinP1I	GCGC	2 cut(s)	5, 234
HinfI	GANTC	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	269, 331
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	2 cut(s)	5, 234
LpnPI	CCDG	2 cut(s)	170, 294
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	90
MboII	GAAGA	1 cut(s)	311
MfeI	CAATTG	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	2 cut(s)	237, 254
MluNI	TGGCCA	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	15, 74, 314
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	149
MunI	CAATTG	1 cut(s)	254
NlaIII	CATG	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	105
SetI	ASST	3 cut(s)	19, 93, 306
SgeI	CNNG	9 cut(s)	79, 103, 107, 155, 169, 242, 282, 321, 325
Sse9I	AATT	2 cut(s)	237, 254
SspMI	CTAG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	237, 254
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TspDTI	ATGAA	3 cut(s)	199, 312, 339
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.