Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

16089678 .. 16091797

Gene Structure 2120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTGATGCAAAACAAGTTCGTTTCATCATCGGAGTTATCGGAAATGTTATCTCCTTTGGTCTCTTTGCCGCACCAGCGAAGACTTTCTGGAGGATCTTCAAGAAGAAATCAGTGGAAGAGTTTTCGTATGTGCCGTACGTAGCAACGGTGATGAATTGTATGTTGTGGGTGTTTTACGGTCTCCCTGTGGTTCACAAAGACAGTATTCTAGTTTCAACCATTAATGGTGTTGGGTTAGTTATCGAACTTTTCTACGTTGGTGTCTACTTGATGTACTGTGGTCACAAGAAGAACCATCGAAGGAACATTTTGGGATTCTTAGCTCTTGAAGTTATTTTGGTGGTGGCTATCATTCTTATTACGCTCTTTGCGCTTAAGGGTGATTTTGTTAAGCAAACATTTGTTGGTGTGATTTGCGATGTCTTCAACATTGCTATGTATGGAGCTCCTTCATTGGCCATTATTAAAGTGGTAAAAACAAAGAGTGTTGAATACATGCCATTCTTGTTGTCTTTGGTCTGTTTCGTTAATGCTGGAATTTGGACTACTTACTCGCTCATCTTCAAGATCGATTACTACGTCCTCGCAAGTAATGGGATTGGAACCTTTTTGGCACTTTCTCAGTTGATAGTGTACTTCATGTACTATAAGTCAACTCCAAAGGAGAAGACGGTGAAGCCATCAGAAGTTGAGATTTCTGCTACGGAGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0033037 GO:0034219 GO:0042545 GO:0043062 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055085 GO:0065003 GO:0070727 GO:0071554 GO:0071555 GO:0071702 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

239

Amino Acids

26.89

Weight (kDa)

9.3

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	9.2e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 198	3e-13	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	540
AfaI	GTAC	4 cut(s)	140, 278, 638, 647
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	6 cut(s)	103, 219, 332, 430, 494, 568
AluBI	AGCT	2 cut(s)	326, 449
AluI	AGCT	2 cut(s)	326, 449
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	68, 188
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	459
ApoI	RAATTY	1 cut(s)	540
AseI	ATTAAT	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	163, 395, 688
BalI	TGGCCA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	451
BbsI	GAAGAC	3 cut(s)	89, 418, 677
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	2 cut(s)	306, 691
BceAI	ACGGC	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	68, 188
BfaI	CTAG	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	607
BpiI	GAAGAC	3 cut(s)	89, 418, 677
BpmI	CTGGAG	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	142
BsaI	GGTCTC	2 cut(s)	68, 188
Bse3DI	GCAATG	1 cut(s)	432
BseCI	ATCGAT	1 cut(s)	573
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	638
BshFI	GGCC	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	451
BsiWI	CGTACG	1 cut(s)	138
BsmAI	GTCTC	2 cut(s)	68, 188
BsnI	GGCC	1 cut(s)	461
Bso31I	GGTCTC	2 cut(s)	68, 188
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	96, 570
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	637
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	607
BspPI	GGATC	1 cut(s)	104
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	2 cut(s)	68, 188
BsrDI	GCAATG	1 cut(s)	432
BssMI	GATC	2 cut(s)	96, 570
Bst4CI	ACNGT	5 cut(s)	151, 182, 206, 281, 676
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	322, 624
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	99, 573
BstMAI	GTCTC	2 cut(s)	68, 188
BstMBI	GATC	2 cut(s)	96, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 373
BstNSI	RCATGY	1 cut(s)	502
BstSNI	TACGTA	1 cut(s)	142
BstV2I	GAAGAC	3 cut(s)	89, 418, 677
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	461
BsuTUI	ATCGAT	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	573
Csp6I	GTAC	4 cut(s)	139, 277, 637, 646
CviAII	CATG	2 cut(s)	499, 643
CviJI	RGCY	5 cut(s)	326, 350, 449, 461, 682
CviKI_1	RGCY	5 cut(s)	326, 350, 449, 461, 682
CviQI	GTAC	4 cut(s)	139, 277, 637, 646
DdeI	CTNAG	2 cut(s)	322, 624
DpnI	GATC	2 cut(s)	98, 572
DpnII	GATC	2 cut(s)	96, 570
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	449
Eco105I	TACGTA	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	451
Eco31I	GGTCTC	2 cut(s)	68, 188
Eco53kI	GAGCTC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	451
FaeI	CATG	2 cut(s)	502, 646
FaiI	YATR	7 cut(s)	132, 164, 440, 444, 500, 644, 651
FatI	CATG	2 cut(s)	498, 642
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	502, 646
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HinfI	GANTC	1 cut(s)	318
HphI	GGTGA	3 cut(s)	163, 395, 688
Hpy166II	GTNNAC	4 cut(s)	196, 268, 637, 657
Hpy188I	TCNGA	3 cut(s)	35, 44, 688
Hpy188III	TCNNGA	4 cut(s)	91, 103, 329, 568
Hpy8I	GTNNAC	4 cut(s)	196, 268, 637, 657
HpyAV	CCTTC	2 cut(s)	297, 462
HpyCH4III	ACNGT	5 cut(s)	151, 182, 206, 281, 676
HpyCH4IV	ACGT	3 cut(s)	141, 258, 582
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 373
HpyF3I	CTNAG	2 cut(s)	322, 624
HpySE526I	ACGT	3 cut(s)	141, 258, 582
Hsp92II	CATG	2 cut(s)	502, 646
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	96, 570
LmnI	GCTCC	2 cut(s)	446, 454
LpnPI	CCDG	4 cut(s)	76, 90, 201, 522
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	3 cut(s)	141, 258, 582
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	98, 572
MboI	GATC	2 cut(s)	96, 570
MboII	GAAGA	8 cut(s)	91, 94, 118, 131, 304, 418, 556, 682
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	2 cut(s)	157, 540
MluNI	TGGCCA	1 cut(s)	461
MnlI	CCTC	3 cut(s)	87, 596, 705
Mox20I	TGGCCA	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	5 cut(s)	225, 378, 393, 468, 531
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	77, 373
NdeII	GATC	2 cut(s)	96, 570
NlaIII	CATG	2 cut(s)	502, 646
NlaIV	GGNNCC	1 cut(s)	607
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	2 cut(s)	134, 579
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	318
Pfl23II	CGTACG	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	451
PspLI	CGTACG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	4 cut(s)	140, 278, 638, 647
RsaNI	GTAC	4 cut(s)	139, 277, 637, 646
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	451
SaqAI	TTAA	5 cut(s)	225, 378, 393, 468, 531
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	96, 570
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	6 cut(s)	144, 261, 328, 451, 585, 611
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SnaBI	TACGTA	1 cut(s)	142
Sse9I	AATT	2 cut(s)	157, 540
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	451
TaaI	ACNGT	5 cut(s)	151, 182, 206, 281, 676
TaiI	ACGT	3 cut(s)	144, 261, 585
TaqI	TCGA	3 cut(s)	246, 301, 573
TasI	AATT	2 cut(s)	157, 540
TatI	WGTACW	3 cut(s)	276, 636, 645
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	5 cut(s)	225, 378, 393, 468, 531
Tru9I	TTAA	5 cut(s)	225, 378, 393, 468, 531
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	16, 170, 444, 631
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	377
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	1 cut(s)	540
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.