RchiOBHm_Chr5g0028121

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
21974206 .. 21974866
661 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30762

Sequence Viewer

Length: 525 bp
ATGGTGCACAAAGAGGCAAGGTCCGTGGTCGGTGTGGTTGGGAATGTCATCTCTGGTGGGCTTTTCCTCTCTCCAATTCCTGCGTTCATACTAATATGGAGAAAAAAAAATGTGGAAGCTTTTGATCCAAAACCTTACCTTACAACAAAAAAGGATAAAAGAGGGTTGCTACATACTTTGTACGTATGTGAACTTGTTTTCTTTGGAGCTATTGTGGTTGGAACTATGTTGGCAATACCCGAGCATAAGATGAAGATGAATCGACATTTGAGGGCTGTCGTAGTTGGTTTTATTTGTGATTTTTTCAATGTCCTCATGTACAACTTTACTTTGTTCATCGTGAGTGAGGTCATCAAAACAAAGAGTGTGCAATATATGTCATTACCGCTCTCAGTTGCCAACTTTCTGAATGGTTGTTGCTGGACTTCTTATGCTCTAATTGGAAAAGTGGACTACTTTATTTTGGTTAGCAATGGTCTTGGTACAATTGCTGGAGCAATTCAATTGATAGTCTATGCAATGTAA

Protein Analysis

174

Amino Acids

19.39

Weight (kDa)

9.44

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 94 - 173 1.9e-16 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000596)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40260 AT5G40260
fragaria_vesca FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica MD17G1035200.v1.1
prunus_persica Prupe.3G283400_v2.0.a1
pyrus_communis pycom17g03250
rosa_chinensis RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 388
AciI CCGC 1 cut(s) 386
AclWI GGATC 1 cut(s) 119
AfaI GTAC 3 cut(s) 182, 320, 484
AgsI TTSAA 2 cut(s) 307, 503
AluBI AGCT 2 cut(s) 119, 209
AluI AGCT 2 cut(s) 119, 209
Alw21I GWGCWC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 239
ApaLI GTGCAC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse3DI GCAATG 2 cut(s) 478, 525
BseDI CCNNGG 1 cut(s) 24
BseMI GCAATG 2 cut(s) 478, 525
BseMII CTCAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 404
BspPI GGATC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 478, 525
BsrGI TGTACA 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 391
BstDSI CCRYGG 1 cut(s) 24
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 9
BstSNI TACGTA 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 3 cut(s) 181, 319, 483
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 316
CviJI RGCY 4 cut(s) 61, 119, 209, 275
CviKI_1 RGCY 4 cut(s) 61, 119, 209, 275
CviQI GTAC 3 cut(s) 181, 319, 483
DdeI CTNAG 1 cut(s) 391
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eco105I TACGTA 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 239
FaeI CATG 1 cut(s) 319
FatI CATG 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 513
Hin1II CATG 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 1 cut(s) 259
Hpy166II GTNNAC 3 cut(s) 7, 191, 451
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 3 cut(s) 7, 191, 451
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 7, 370, 518
HpyF3I CTNAG 1 cut(s) 391
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 206, 494
LpnPI CCDG 4 cut(s) 39, 93, 406, 477
MaeII ACGT 1 cut(s) 183
MalI GATC 1 cut(s) 126
MbiI CCGCTC 1 cut(s) 388
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 265
MfeI CAATTG 2 cut(s) 486, 503
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 5 cut(s) 75, 438, 486, 498, 503
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 7, 77, 155, 264, 323, 340
MunI CAATTG 2 cut(s) 486, 503
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 319
PfeI GAWTC 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 184
PspPI GGNCC 1 cut(s) 21
RsaI GTAC 3 cut(s) 182, 320, 484
RsaNI GTAC 3 cut(s) 181, 319, 483
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 21
SduI GDGCHC 1 cut(s) 9
SetI ASST 7 cut(s) 23, 121, 136, 141, 186, 211, 351
SinI GGWCC 1 cut(s) 21
SnaBI TACGTA 1 cut(s) 184
Sse9I AATT 5 cut(s) 75, 438, 486, 498, 503
SsiI CCGC 1 cut(s) 386
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 262
TasI AATT 5 cut(s) 75, 438, 486, 498, 503
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 1 cut(s) 259
TspDTI ATGAA 4 cut(s) 76, 266, 272, 325
TspGWI ACGGA 1 cut(s) 13
VneI GTGCAC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.