Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Forward (+)

25751273 .. 25753667

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G283400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTGACCGCTGATGCAGCACGAAACGTCGTCGGTATCATTGGCAATGTCATCTCCTTTGGCCTTTTCCTCTCCCCAGTTCCAACATTTTACAGAATCATTAAGAAAAAGACGGTGGAAGAATTCAAGCCGGATCCTTACATTGCAACAGTGTTGAACTGCTTGTTCTGGTGTTTGTATGGCATGCCATTTGTTCACCCAGACAGCCTTCTTGTGGTCACCATTAACGGAGTTGGGCTTGTTCTGGAGCTCGCATATCTTGCTGTCTTCTTCATTTATGCTCAGAGTAAAGGCAGGAAGAAGGTAGCTTTTGGGCTTGGCTTTGATGTTGTTCTCTTTGTCGCCATTGCCGCAATATCGCTTACAGCATTGCACGGCACAAAGAAGAGGTCTCTGATGGTCGGCATTGTCTGTGATATTTTCAATATCATAATGTACGGTTCTCCTCTTACAATCATGGCAAAGGTTATCAAAACCAAGAGTGTGAAATACATGCCATTTTACCTCTCATTGACCAACTTCCTAAATGGTTGCTGCTGGACAGCTTATGCTCTCATCAAATTTGACATATACATGCTGGTCAGCAATGGTCTTGGTGCAGTTTCTGGTGCTATTCAACTCATACTTTATGCAGCGTACTGCAAGTCAACTCCAAAAGACGACGATGACTTTGCTGGAAAGCCTACTACTGAAGTGCAGCTCTCGAATACAAATGCAGCTGCTGCTGCTAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

246

Amino Acids

26.65

Weight (kDa)

9.04

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 351
AclWI	GGATC	2 cut(s)	128, 141
AcsI	RAATTY	2 cut(s)	122, 560
AcuI	CTGAAG	1 cut(s)	711
AfaI	GTAC	2 cut(s)	437, 638
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	127, 157, 424, 617
AluBI	AGCT	5 cut(s)	250, 308, 545, 700, 719
AluI	AGCT	5 cut(s)	250, 308, 545, 700, 719
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	128, 141
AlwNI	CAGNNNCTG	2 cut(s)	605, 722
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	8 cut(s)	17, 534, 632, 697, 716, 719, 722, 725
ApoI	RAATTY	2 cut(s)	122, 560
ArsI	GACNNNNNNTTYG	4 cut(s)	374, 406, 653, 685
AsuHPI	GGTGA	3 cut(s)	16, 188, 211
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	8 cut(s)	29, 521, 644, 706, 709, 709, 712, 728
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	729
BisI	GCNGC	9 cut(s)	18, 351, 535, 633, 698, 717, 720, 723, 726
BlsI	GCNGC	9 cut(s)	19, 352, 536, 634, 699, 718, 721, 724, 727
BmiI	GGNNCC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	5 cut(s)	52, 141, 345, 368, 592
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	5 cut(s)	52, 141, 345, 368, 592
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	8 cut(s)	29, 521, 644, 706, 709, 709, 712, 728
BsgI	GTGCAG	2 cut(s)	618, 716
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	2 cut(s)	9, 351
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	128, 141
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	5 cut(s)	52, 141, 345, 368, 592
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	133
Bst4CI	ACNGT	3 cut(s)	115, 151, 440
Bst6I	CTCTTC	1 cut(s)	380
BstAPI	GCANNNNNTGC	2 cut(s)	260, 722
BstC8I	GCNNGC	2 cut(s)	185, 252
BstDEI	CTNAG	1 cut(s)	282
BstEII	GGTNACC	2 cut(s)	4, 217
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 260, 350, 722, 725
BstNSI	RCATGY	3 cut(s)	187, 496, 577
BstPI	GGTNACC	2 cut(s)	4, 217
BstV1I	GCAGC	8 cut(s)	29, 521, 644, 706, 709, 709, 712, 728
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	185, 252
CaiI	CAGNNNCTG	2 cut(s)	605, 722
Csp6I	GTAC	2 cut(s)	436, 637
CviAII	CATG	4 cut(s)	184, 457, 493, 574
CviQI	GTAC	2 cut(s)	436, 637
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	711
Eco91I	GGTNACC	2 cut(s)	4, 217
EcoICRI	GAGCTC	1 cut(s)	250
EcoO65I	GGTNACC	2 cut(s)	4, 217
EcoRI	GAATTC	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	4 cut(s)	187, 460, 496, 577
FatI	CATG	4 cut(s)	183, 456, 492, 573
Fnu4HI	GCNGC	9 cut(s)	18, 351, 535, 633, 698, 717, 720, 723, 726
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	9 cut(s)	18, 351, 535, 633, 698, 717, 720, 723, 726
FspBI	CTAG	1 cut(s)	729
GluI	GCNGC	9 cut(s)	18, 351, 535, 633, 698, 717, 720, 723, 726
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	4 cut(s)	187, 460, 496, 577
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	3 cut(s)	16, 188, 211
Hpy166II	GTNNAC	2 cut(s)	196, 648
Hpy188I	TCNGA	3 cut(s)	285, 396, 737
Hpy188III	TCNNGA	2 cut(s)	245, 703
Hpy8I	GTNNAC	2 cut(s)	196, 648
Hpy99I	CGWCG	3 cut(s)	32, 35, 665
HpyAV	CCTTC	2 cut(s)	218, 295
HpyCH4III	ACNGT	3 cut(s)	115, 151, 440
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	8 cut(s)	17, 146, 373, 599, 632, 642, 697, 716
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 260, 350, 722, 725
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	187, 460, 496, 577
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	8 cut(s)	29, 521, 644, 706, 709, 709, 712, 728
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	4, 217
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	5 cut(s)	131, 259, 262, 310, 397
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	122, 560
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	4 cut(s)	80, 381, 456, 515
MseI	TTAA	2 cut(s)	102, 225
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	2 cut(s)	11, 719
MspI	CCGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	17, 260, 350, 722, 725
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	187, 460, 496, 577
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	4, 217
NspI	RCATGY	3 cut(s)	187, 496, 577
PaeI	GCATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	9 cut(s)	19, 352, 536, 634, 699, 718, 721, 724, 727
Psp124BI	GAGCTC	1 cut(s)	252
PspEI	GGTNACC	2 cut(s)	4, 217
PspN4I	GGNNCC	1 cut(s)	135
PstNI	CAGNNNCTG	2 cut(s)	605, 722
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	2 cut(s)	437, 638
RsaNI	GTAC	2 cut(s)	436, 637
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	102, 225
SatI	GCNGC	9 cut(s)	18, 351, 535, 633, 698, 717, 720, 723, 726
Sau3AI	GATC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	572
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	2 cut(s)	122, 560
SsiI	CCGC	2 cut(s)	9, 351
SspMI	CTAG	1 cut(s)	729
SstI	GAGCTC	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	115, 151, 440
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	704
TasI	AATT	2 cut(s)	122, 560
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	102, 225
Tru9I	TTAA	2 cut(s)	102, 225
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	2 cut(s)	4, 217
TseI	GCWGC	8 cut(s)	17, 534, 632, 697, 716, 719, 722, 725
Tsp45I	GTSAC	2 cut(s)	4, 217
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	2 cut(s)	122, 560
XceI	RCATGY	3 cut(s)	187, 496, 577
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.