Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000596

Physical Location & Seq

Genomic Coordinates Reverse (-)

89046836 .. 89047707

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG561400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGCACACAGATGCTAGATTCGTGGTCGGTGTGGTTGGGAATGTCATTTCTGGTGGCCTTTTCCTCTCTCCAATTCCTACATTCACACAGATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTACAACAGTGTTGAACTGTTTGTTCTGGTGTTACTACGGATTGCCATTCGTGAATCCAAATAGCATTTTAGTTGTCACTATTAATGGAATTGGGCTATTTATAGAGCTCATGTATATTACCATATTCTTCTATTATGCCGCATCAAAAGGACGAAAGAGGGTTGCTACATACTTTATATGTGAACTTGTTTTATTTGGGGCTTTGGTGGCTGCAACTATGTTGGCAATACCTGAGCATAAGATGGCAATAAATCGACGTTTGAGGGCTGTTGTAGTTGGTGTGATCTGTGATTTTTTCAATGTTCTCATGTATGGCTCTCCCTTGTTCAACCTGAAAGATGTTATTAAAACTAAGAGTATGAAATATATGCCATTCACTCTCCTAGTGGCCAACTTCCTGAATGGTTGTTGCTGGACATCCTATGCTCTTATTGGAAAAGTTGACTACTTCATTTTAATTAGCAACGGACTCGGTGCAATTTTTGGAGCAGTTCAAGTGATGGTTTATGCAAGATACTACAAAACTACACCAAAAGATGAAGACCTCTCTAGCAAGACTACTAATGAAGTGCAACTTTGTACTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

243

Amino Acids

27.32

Weight (kDa)

9.1

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 96	1.1e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 222	3.2e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40260 AT5G40260
fragaria_vesca	FvH4_4g13312 FvH4_6g50390 FvH4_6g50390 FvH4_6g50580 FvH4_7g10730
malus_domestica	MD17G1035200.v1.1
prunus_persica	Prupe.3G283400_v2.0.a1
pyrus_communis	pycom17g03250
rosa_chinensis	RchiOBHm_Chr1g0349441 RchiOBHm_Chr1g0359391 RchiOBHm_Chr1g0359411 RchiOBHm_Chr1g0359541 RchiOBHm_Chr1g0359551 RchiOBHm_Chr1g0360181 RchiOBHm_Chr2g0131641 RchiOBHm_Chr2g0171121 RchiOBHm_Chr4g0413611 RchiOBHm_Chr5g0028121 RchiOBHm_Chr5g0037121 RchiOBHm_Chr5g0083341 RchiOBHm_Chr7g0239371
rosa_laevigata	RLG00000008206 RLG00000022004 RLG00000027823 RLG00000027873 RLG00000028548 RLG00000037029
rosa_multiflora	Rmu_sc0001287.1_g000004 Rmu_sc0001444.1_g000014 Rmu_sc0002245.1_g000046 Rmu_sc0002495.1_g000008 Rmu_sc0025358.1_g000001 Rmu_ssc0000358.1_g000004 Rmu_ssc0000358.1_g000005 Rmu_ssc0000368.1_g000047
rosa_roxburghii	Rroxscaffold_2G00080810 Rroxscaffold_4G00296320 Rroxscaffold_5G00357560
rosa_rugosa	Rorug01G0203900 Rorug01G0270900 Rorug01G0271000 Rorug01G0272100 Rorug01G0275700 Rorug02G0553600 Rorug04G0121500 Rorug04G0121600 Rorug05G0104200 Rorug05G0104300 Rorug05G0484300
rosa_samantha	Rh1AG221100 Rh1AG284300 Rh1AG284400 Rh1AG289400 Rh1CG206000 Rh1CG272400 Rh1DG216500 Rh1DG279300 Rh1DG279400 Rh1DG284500 Rh2AG627300 Rh2BG637200 Rh2DG648800 Rh2DG654400 Rh4CG192300 Rh4DG176500 Rh5AG533700 Rh5BG561400 Rh5DG570300 Rh7CG498900 Rh7DG467000
rosa_wichuraiana	Rw1G018790 Rw1G025240 Rw1G025250 Rw1G025680 Rw2G028530 Rw2G051920 Rw4G015140 Rw5G049910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	528
AfaI	GTAC	1 cut(s)	721
AgsI	TTSAA	4 cut(s)	154, 439, 469, 635
AluBI	AGCT	2 cut(s)	119, 247
AluI	AGCT	2 cut(s)	119, 247
Alw21I	GWGCWC	2 cut(s)	9, 249
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	58, 528
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	9, 249
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	376, 634
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BfaI	CTAG	3 cut(s)	18, 524, 690
BisI	GCNGC	2 cut(s)	279, 351
BlsI	GCNGC	2 cut(s)	280, 352
BmsI	GCATC	2 cut(s)	4, 290
BpiI	GAAGAC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	372
BseGI	GGATG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	60, 530
BsiHKAI	GWGCWC	2 cut(s)	9, 249
BsnI	GGCC	2 cut(s)	60, 530
Bsp1286I	GDGCHC	2 cut(s)	9, 249
Bsp143I	GATC	2 cut(s)	124, 423
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	60, 530
BspCNI	CTCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	119
BssMI	GATC	2 cut(s)	124, 423
Bst4CI	ACNGT	2 cut(s)	148, 158
BstDEI	CTNAG	2 cut(s)	372, 492
BstF5I	GGATG	1 cut(s)	557
BstKTI	GATC	2 cut(s)	127, 426
BstMBI	GATC	2 cut(s)	124, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	60, 530
BtsCI	GGATG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	2 cut(s)	250, 448
CviJI	RGCY	9 cut(s)	60, 119, 235, 247, 341, 350, 407, 456, 530
CviKI_1	RGCY	9 cut(s)	60, 119, 235, 247, 341, 350, 407, 456, 530
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	2 cut(s)	372, 492
DpnI	GATC	2 cut(s)	126, 425
DpnII	GATC	2 cut(s)	124, 423
EaeI	YGGCCR	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	2 cut(s)	253, 451
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FatI	CATG	2 cut(s)	249, 447
Fnu4HI	GCNGC	2 cut(s)	279, 351
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	279, 351
FspBI	CTAG	3 cut(s)	18, 524, 690
GluI	GCNGC	2 cut(s)	279, 351
HaeIII	GGCC	2 cut(s)	60, 530
Hin1II	CATG	2 cut(s)	253, 451
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	3 cut(s)	21, 193, 609
Hpy166II	GTNNAC	3 cut(s)	7, 323, 583
Hpy188III	TCNNGA	2 cut(s)	190, 538
Hpy8I	GTNNAC	3 cut(s)	7, 323, 583
Hpy99I	CGWCG	1 cut(s)	399
HpyCH4III	ACNGT	2 cut(s)	148, 158
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	7, 353, 617, 650, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	372, 492
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	253, 451
Kzo9I	GATC	2 cut(s)	124, 423
LmnI	GCTCC	1 cut(s)	626
LpnPI	CCDG	6 cut(s)	39, 151, 384, 485, 538, 551
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	4, 290
MaeI	CTAG	3 cut(s)	18, 524, 690
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	170, 214
MalI	GATC	2 cut(s)	126, 425
MboI	GATC	2 cut(s)	124, 423
MboII	GAAGA	2 cut(s)	259, 692
MhlI	GDGCHC	2 cut(s)	9, 249
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	4 cut(s)	75, 228, 597, 618
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	603
MnlI	CCTC	4 cut(s)	77, 291, 396, 695
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	3 cut(s)	222, 486, 596
MslI	CAYNNNNRTG	2 cut(s)	12, 94
Msp20I	TGGCCA	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	2 cut(s)	124, 423
NlaIII	CATG	2 cut(s)	253, 451
NmuCI	GTSAC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	21, 193
PkrI	GCNGC	2 cut(s)	280, 352
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PshBI	ATTAAT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	249
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	2 cut(s)	12, 94
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	222, 486, 596
SatI	GCNGC	2 cut(s)	279, 351
Sau3AI	GATC	2 cut(s)	124, 423
SchI	GAGTC	1 cut(s)	603
SduI	GDGCHC	2 cut(s)	9, 249
SetI	ASST	8 cut(s)	121, 136, 141, 249, 373, 400, 474, 687
SfaNI	GCATC	2 cut(s)	4, 290
SmiMI	CAYNNNNRTG	2 cut(s)	12, 94
Sse9I	AATT	4 cut(s)	75, 228, 597, 618
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	3 cut(s)	18, 524, 690
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	148, 158
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	123, 394
TasI	AATT	4 cut(s)	75, 228, 597, 618
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	21, 193
Tru1I	TTAA	3 cut(s)	222, 486, 596
Tru9I	TTAA	3 cut(s)	222, 486, 596
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	515, 580, 693, 720
TspGWI	ACGGA	2 cut(s)	192, 621
TspRI	CASTG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	222
XspI	CTAG	3 cut(s)	18, 524, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.