Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018918

Physical Location & Seq

Genomic Coordinates Forward (+)

44742364 .. 44742675

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG206100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACTTCGTTACGAAGATCATCCATGTCCTTCAGGAGGCAAGGCTCTTCCGGCCGCATTTGGGAAGATAGGCTTCAAATAGTAGAACATAAGTCCGGCCACGCTCAGGCCATCTTTTCCGGTGACAAAAGCAACGACGAGGATCTCCGAAATCTTGATGGAAGATTCCAAGACAGACGGCATGTTGATTTAGGTTCTCCATCGAGTCCGTCTACGTCTACGCCTAATTCAAAGCAAGAACAAAAAGCAGCTCAAAGATGTGCTCTTTCTTCCATTTTTGGGCGATGTATGGGGTCTCCTACGGCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

103

Amino Acids

11.4

Weight (kDa)

10.02

Isoelectric Point (pI)

82.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4666	PF15697	1 - 52	1.8e-08	Domain of unknown function (DUF4666)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018918)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G274900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349451
rosa_roxburghii	Rroxscaffold_4G00305540
rosa_rugosa	Rorug01G0203900
rosa_samantha	Rh1AG221200 Rh1BG187300 Rh1CG206100 Rh1DG216600
rosa_wichuraiana	Rw1G018800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	212, 218
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	52, 97
AcuI	CTGAAG	1 cut(s)	16
AfiI	CCNNNNNNNGG	4 cut(s)	36, 61, 106, 279
AgsI	TTSAA	2 cut(s)	77, 231
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	3 cut(s)	52, 97, 108
ApeKI	GCWGC	2 cut(s)	248, 305
AsuHPI	GGTGA	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	119, 152, 208
BceAI	ACGGC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	3 cut(s)	55, 249, 306
BlsI	GCNGC	3 cut(s)	56, 250, 307
Bpu10I	CCTNAGC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 61, 106, 279
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	4 cut(s)	36, 61, 106, 279
BseMII	CTCAG	1 cut(s)	119
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	54, 99, 110
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	51, 96, 120
BslI	CCNNNNNNNGG	4 cut(s)	36, 61, 106, 279
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	54, 99, 110
Bso31I	GGTCTC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	17, 142
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	3 cut(s)	54, 99, 110
BspCNI	CTCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	300
BssMI	GATC	2 cut(s)	17, 142
Bst6I	CTCTTC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	20, 145
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	17, 142
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	54, 99, 110
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	20
CviAII	CATG	2 cut(s)	25, 182
CviJI	RGCY	7 cut(s)	45, 54, 73, 99, 110, 251, 308
CviKI_1	RGCY	7 cut(s)	45, 54, 73, 99, 110, 251, 308
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	2 cut(s)	19, 144
DpnII	GATC	2 cut(s)	17, 142
EaeI	YGGCCR	2 cut(s)	52, 97
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	300
Eco52I	CGGCCG	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	28, 185
FaiI	YATR	4 cut(s)	26, 90, 183, 290
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FatI	CATG	2 cut(s)	24, 181
FblI	GTMKAC	2 cut(s)	212, 218
Fnu4HI	GCNGC	3 cut(s)	55, 249, 306
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	3 cut(s)	55, 249, 306
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	3 cut(s)	55, 249, 306
HaeIII	GGCC	3 cut(s)	54, 99, 110
HapII	CCGG	3 cut(s)	51, 96, 120
Hin1II	CATG	2 cut(s)	28, 185
HinfI	GANTC	2 cut(s)	165, 205
HpaII	CCGG	3 cut(s)	51, 96, 120
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	213, 219
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	34, 155
Hpy8I	GTNNAC	2 cut(s)	213, 219
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	28, 185
Kzo9I	GATC	2 cut(s)	17, 142
LguI	GCTCTTC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	19, 64, 92, 109, 133
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	310
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	9, 122
MalI	GATC	2 cut(s)	19, 144
MboI	GATC	2 cut(s)	17, 142
MboII	GAAGA	5 cut(s)	27, 39, 77, 174, 261
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	30, 133
MspI	CCGG	3 cut(s)	51, 96, 120
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	17, 142
NlaIII	CATG	2 cut(s)	28, 185
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	56, 250, 307
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	52
SatI	GCNGC	3 cut(s)	55, 249, 306
Sau3AI	GATC	2 cut(s)	17, 142
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	3 cut(s)	196, 218, 253
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	203
TasI	AATT	1 cut(s)	226
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	2 cut(s)	248, 305
Tsp45I	GTSAC	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	34
XceI	RCATGY	1 cut(s)	185
XmiI	GTMKAC	2 cut(s)	212, 218
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.