Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0019170

Physical Location & Seq

Genomic Coordinates Reverse (-)

411284 .. 413352

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G008000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

AAATCACCAGTAAGAAATTCCAGCTTTCAGGTCAAGCCCCGAAAGCACATCCCAGTGGATAAAACACTGAAGGGACTCTGCTATTCAGGAAGATTGGCAGAAGCCGTTGGGCTGTTGTGCCATACAGGGTTACAGGTAGACCCAGACACCTATGCTCTTCTATTGCAAGAATGTATATTTAGGAAAGAGTATAAGAAGGGGAAAATAATTCATGCACAAATAATCGTTGTGGGGTTTGTTCTCAATGAATATTTGAAGACCAAGTTGTTGATCTTGTATGCAAAATCAGGAAATTTAGGAACTGCCCACATTTTGCTTGATAAGTTGCTTGAGAAAAGCTTGGTTTCATGGAATGCAATAATTGCAGGGTATGTGCAAAAGGGACTGGAAGATGTGGGATTGAGTCTTTATTACAAGATGAGACATAGTGGTTTGATCCCAGACCAATATACCTTTGCATCAGTGTTCAGGGCGTGTGCCTCTTTAGCAACATTGGAGCATGGGAAGCAAGCCCATGGTATCATGATAAAGTGCCAAATTGGAGAAAATGTTGTAGTCAATAGTGCCCTCATGGATATGTACTTCAAATGTAGTGATTTATGTGATGGGCAAAGGGTATTTAATACATGTCAAAATAGGAATGCCATTACCTGGACTGCTTTGATATCCGGTTATGGTCAGCATGGAAGAGTTGTAGAGGTCTTAGATATTTTTCATAGGATGAAGAGTGAAGGTTTCAGACCAAATTATGTTACTTTTATCTCAGTTCTTTCTGCTTGTAGTCATGGAGGTTTAGTTGATGAGGCTTGGGAATATTTTTCTTCAATGACAAGAGACTATGGAATTCACCCAAGAGCACAGCATTATGCTGCCTTGGTTGACCTTTTGGGACGTGCTGGGCAGTTAGAAGAGGCCTATGAGTTTGTTTCGAACTCACCTTGTAAGGAGCACTCAGTGATGTGGGGTGCTTTTCTTTGGGCTTGTAGAATTCATGGAGACAGAGACTTGTTAAAGCTTGCAGCAAAGAAATACTTCGAATTGGAACCAGAAAATGCTGGAAAGTATGTAGTCTTGTCTAATGCTTATGCCACTTTTGGGTTGTGGGACAATGTTGCTAAGCTTAGGTCTATGATGACGGATTCAGGGATGAGAAAGGAGCCTGCTTATAGCAAAGTAGAGGTTCAAAAAGAGGTCCACTTCTTTCTTAAGGGTGATACATATCACAAACAATCCAAGGAGATTTATGAGATGGTTAAATTGGTTGATTGCTCTCTAAAGGATTCAGGTTATGTTCCTCATTTAAGTGGAAGCTCAGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PPR PPR_2 TK

Protein Analysis

441

Amino Acids

49.52

Weight (kDa)

8.73

Isoelectric Point (pI)

25.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16470
fragaria_vesca	FvH4_3g00700
prunus_persica	Prupe.4G008000_v2.0.a1
pyrus_communis	pycom10g28540
rosa_laevigata	RLG00000030908
rosa_multiflora	Rmu_sc0019885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075320
rosa_rugosa	Rorug04G0388000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	4 cut(s)	16, 292, 843, 987
AcuI	CTGAAG	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	955
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	651, 1095
AflII	CTTAAG	1 cut(s)	1205
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	256, 586, 825, 1184
AjiI	CACGTC	1 cut(s)	893
AjnI	CCWGG	1 cut(s)	650
AluBI	AGCT	5 cut(s)	24, 339, 1015, 1120, 1311
AluI	AGCT	5 cut(s)	24, 339, 1015, 1120, 1311
Alw21I	GWGCWC	2 cut(s)	859, 951
Alw26I	GTCTC	4 cut(s)	415, 828, 990, 996
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	1 cut(s)	912
ApeKI	GCWGC	2 cut(s)	869, 1019
ApoI	RAATTY	4 cut(s)	16, 292, 843, 987
Asp700I	GAANNNNTTC	1 cut(s)	1031
AspS9I	GGNCC	1 cut(s)	1192
AsuHPI	GGTGA	3 cut(s)	839, 927, 1223
AsuII	TTCGAA	2 cut(s)	929, 1035
AvaII	GGWCC	1 cut(s)	1192
BaeGI	GKGCMC	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	859, 951
BbvI	GCAGC	2 cut(s)	856, 1031
BccI	CCATC	2 cut(s)	599, 1243
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	652
BcoDI	GTCTC	4 cut(s)	415, 828, 990, 996
BfrI	CTTAAG	1 cut(s)	1205
BisI	GCNGC	2 cut(s)	870, 1020
BlpI	GCTNAGC	1 cut(s)	1116
BlsI	GCNGC	2 cut(s)	871, 1021
Bme1390I	CCNGG	1 cut(s)	652
Bme18I	GGWCC	1 cut(s)	1192
BmgBI	CACGTC	1 cut(s)	893
BmgT120I	GGNCC	1 cut(s)	1192
BmiI	GGNNCC	2 cut(s)	1044, 1158
BmrFI	CCNGG	1 cut(s)	652
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	1121
Bpu1102I	GCTNAGC	1 cut(s)	1116
Bpu14I	TTCGAA	2 cut(s)	929, 1035
BpuEI	CTTGAG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	1218
BsaJI	CCNNGG	3 cut(s)	514, 873, 1233
BsaWI	WCCGGW	1 cut(s)	668
BsaXI	ACNNNNNCTCC	4 cut(s)	534, 564, 780, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	651, 1095
Bse1I	ACTGG	3 cut(s)	8, 53, 390
Bse8I	GATNNNNATC	1 cut(s)	1218
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	3 cut(s)	514, 873, 1233
BseGI	GGATG	3 cut(s)	48, 726, 1152
BseJI	GATNNNNATC	1 cut(s)	1218
BseLI	CCNNNNNNNGG	2 cut(s)	651, 1095
BseMII	CTCAG	2 cut(s)	777, 966
BseNI	ACTGG	3 cut(s)	8, 53, 390
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	856, 1031
BseYI	CCCAGC	1 cut(s)	896
BshFI	GGCC	1 cut(s)	914
BsiHKAI	GWGCWC	2 cut(s)	859, 951
BsiSI	CCGG	1 cut(s)	669
BslFI	GGGAC	4 cut(s)	87, 396, 903, 1118
BslI	CCNNNNNNNGG	2 cut(s)	651, 1095
BsmAI	GTCTC	4 cut(s)	415, 828, 990, 996
BsmFI	GGGAC	4 cut(s)	87, 396, 903, 1118
BsmI	GAATGC	2 cut(s)	358, 646
BsnI	GGCC	1 cut(s)	914
Bsp119I	TTCGAA	2 cut(s)	929, 1035
Bsp1286I	GDGCHC	3 cut(s)	568, 859, 951
Bsp143I	GATC	2 cut(s)	270, 435
Bsp1720I	GCTNAGC	1 cut(s)	1116
Bsp19I	CCATGG	1 cut(s)	514
BspANI	GGCC	1 cut(s)	914
BspCNI	CTCAG	2 cut(s)	776, 965
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	1044, 1158
BspPI	GGATC	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	162
BspT104I	TTCGAA	2 cut(s)	929, 1035
BspTI	CTTAAG	1 cut(s)	1205
BsrI	ACTGG	3 cut(s)	8, 53, 390
BssECI	CCNNGG	3 cut(s)	514, 873, 1233
BssMI	GATC	2 cut(s)	270, 435
BssT1I	CCWWGG	3 cut(s)	514, 873, 1233
Bst2UI	CCWGG	1 cut(s)	652
Bst6I	CTCTTC	4 cut(s)	162, 682, 719, 903
BstAFI	CTTAAG	1 cut(s)	1205
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBI	TTCGAA	2 cut(s)	929, 1035
BstC8I	GCNNGC	3 cut(s)	510, 1017, 1161
BstDEI	CTNAG	6 cut(s)	703, 763, 952, 1116, 1121, 1312
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	3 cut(s)	48, 726, 1152
BstKTI	GATC	2 cut(s)	273, 438
BstMAI	GTCTC	4 cut(s)	415, 828, 990, 996
BstMBI	GATC	2 cut(s)	270, 435
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 362, 485, 505
BstNI	CCWGG	1 cut(s)	652
BstNSI	RCATGY	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	650
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	856, 1031
BstV2I	GAAGAC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	914
BtgI	CCRYGG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	893
BtsCI	GGATG	3 cut(s)	48, 726, 1152
BtsIMutI	CAGTG	4 cut(s)	60, 65, 468, 960
Cac8I	GCNNGC	3 cut(s)	510, 1017, 1161
CciI	TCATGA	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	1192
Csp6I	GTAC	1 cut(s)	580
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	6 cut(s)	703, 763, 952, 1116, 1121, 1312
DpnI	GATC	2 cut(s)	272, 437
DpnII	GATC	2 cut(s)	270, 435
DraIII	CACNNNGTG	1 cut(s)	955
Eam1104I	CTCTTC	4 cut(s)	162, 682, 719, 903
EarI	CTCTTC	4 cut(s)	162, 682, 719, 903
Eco130I	CCWWGG	3 cut(s)	514, 873, 1233
Eco147I	AGGCCT	1 cut(s)	914
Eco32I	GATATC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	1192
Eco57I	CTGAAG	1 cut(s)	89
EcoRI	GAATTC	2 cut(s)	843, 987
EcoRII	CCWGG	1 cut(s)	650
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	3 cut(s)	514, 873, 1233
ErhI	CCWWGG	3 cut(s)	514, 873, 1233
FalI	AAGNNNNNCTT	2 cut(s)	1016, 1048
FaqI	GGGAC	4 cut(s)	87, 396, 903, 1118
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	870, 1020
FokI	GGATG	3 cut(s)	35, 733, 1159
Fsp4HI	GCNGC	2 cut(s)	870, 1020
GluI	GCNGC	2 cut(s)	870, 1020
GsaI	CCCAGC	1 cut(s)	900
HaeIII	GGCC	1 cut(s)	914
HapII	CCGG	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	3 cut(s)	337, 1013, 1118
HinfI	GANTC	4 cut(s)	75, 403, 1139, 1280
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	3 cut(s)	839, 927, 1223
Hpy166II	GTNNAC	3 cut(s)	139, 880, 1195
Hpy188I	TCNGA	1 cut(s)	740
Hpy188III	TCNNGA	3 cut(s)	87, 288, 523
Hpy8I	GTNNAC	3 cut(s)	139, 880, 1195
HpyAV	CCTTC	3 cut(s)	64, 190, 725
HpyCH4IV	ACGT	1 cut(s)	892
HpyCH4V	TGCA	8 cut(s)	166, 215, 281, 356, 365, 376, 458, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 362, 485, 505
HpyF3I	CTNAG	6 cut(s)	703, 763, 952, 1116, 1121, 1312
HpySE526I	ACGT	1 cut(s)	892
Kzo9I	GATC	2 cut(s)	270, 435
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	3 cut(s)	496, 946, 1156
Lsp1109I	GCAGC	2 cut(s)	856, 1031
LweI	GCATC	1 cut(s)	467
MaeII	ACGT	1 cut(s)	892
MaeIII	GTNAC	2 cut(s)	129, 751
MalI	GATC	2 cut(s)	272, 437
MboI	GATC	2 cut(s)	270, 435
MboII	GAAGA	8 cut(s)	102, 149, 268, 401, 699, 736, 813, 920
MhlI	GDGCHC	3 cut(s)	568, 859, 951
MlyI	GAGTC	2 cut(s)	69, 412
MnlI	CCTC	9 cut(s)	490, 578, 691, 782, 796, 904, 1171, 1183, 1305
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	5 cut(s)	621, 1010, 1206, 1254, 1301
MslI	CAYNNNNRTG	3 cut(s)	53, 575, 1302
MspCI	CTTAAG	1 cut(s)	1205
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	1 cut(s)	652
Mva1269I	GAATGC	2 cut(s)	358, 646
MvaI	CCWGG	1 cut(s)	652
MwoI	GCNNNNNNNGC	4 cut(s)	43, 362, 485, 505
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	2 cut(s)	270, 435
NlaIV	GGNNCC	2 cut(s)	1044, 1158
NspI	RCATGY	1 cut(s)	630
NspV	TTCGAA	2 cut(s)	929, 1035
PagI	TCATGA	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	914
PciI	ACATGT	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	162
PctI	GAATGC	2 cut(s)	358, 646
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	2 cut(s)	1139, 1280
PflMI	CCANNNNNTGG	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	871, 1021
PleI	GAGTC	2 cut(s)	69, 411
PpsI	GAGTC	2 cut(s)	69, 411
PscI	ACATGT	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	1044, 1158
PspPI	GGNCC	1 cut(s)	1192
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	3 cut(s)	53, 575, 1302
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	5 cut(s)	621, 1010, 1206, 1254, 1301
SatI	GCNGC	2 cut(s)	870, 1020
Sau3AI	GATC	2 cut(s)	270, 435
Sau96I	GGNCC	1 cut(s)	1192
SchI	GAGTC	2 cut(s)	69, 412
ScrFI	CCNGG	1 cut(s)	652
SduI	GDGCHC	3 cut(s)	568, 859, 951
SfaNI	GCATC	1 cut(s)	467
SfuI	TTCGAA	2 cut(s)	929, 1035
SinI	GGWCC	1 cut(s)	1192
SmiMI	CAYNNNNRTG	3 cut(s)	53, 575, 1302
SmlI	CTYRAG	2 cut(s)	329, 1205
SmoI	CTYRAG	2 cut(s)	329, 1205
SseBI	AGGCCT	1 cut(s)	914
SspI	AATATT	2 cut(s)	251, 815
StuI	AGGCCT	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	650
StyI	CCWWGG	3 cut(s)	514, 873, 1233
TaiI	ACGT	1 cut(s)	895
TaqI	TCGA	2 cut(s)	929, 1035
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	1139, 1280
Tru1I	TTAA	5 cut(s)	621, 1010, 1206, 1254, 1301
Tru9I	TTAA	5 cut(s)	621, 1010, 1206, 1254, 1301
TscAI	CASTG	4 cut(s)	60, 72, 468, 960
TseI	GCWGC	2 cut(s)	869, 1019
TspDTI	ATGAA	6 cut(s)	200, 261, 336, 704, 737, 980
TspGWI	ACGGA	1 cut(s)	1151
TspRI	CASTG	4 cut(s)	60, 72, 468, 960
Van91I	CCANNNNNTGG	1 cut(s)	651
Vha464I	CTTAAG	1 cut(s)	1205
VpaK11BI	GGWCC	1 cut(s)	1192
XapI	RAATTY	4 cut(s)	16, 292, 843, 987
XceI	RCATGY	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.