FvH4_3g00700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014964
Physical Location & Seq
Reverse (-)
337602 .. 341327
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00700.t1

Sequence Viewer

Length: 849 bp
ATGTTAGCTATTTCAAGGATGAAGGCTCTCATCTCAACCCACTACATCACCAAGACCACACCTTTATCCCTCTTATCTTCAGCCTCTAAATCAATCCGTTCCTACCCACCAACCCAATTCAAAACCCCCAATTTCCTCCACCAACCCAATACTTTTGTGCCCTATGCTTCTCTCTCTTCCGAGATAGCCCCCACCGGAGCTCTTGAAATGGACGCGGCGTCTCGCCGGCAGCAACGCTCCGGTGAGATTCACGTCGTCGTTGGTCCAATGTTTGCCGGAAAGACCACCACGCTTCTTCGCAGGATTCAATCCGAGAAAGTCGATGGCAGTAACGTTGCAGTAATAAAATCAAACAAGGATACAAGATATGGATTGGATTCGATTGTGACACATGATGGGGTTAAATTGCCTTGTTGGGCATTACCAAATCTGTCATCATTCAAACAAAAGTTTGGTCTTGATGCATATGAGCAGCTAGATGTAATCGGTATTGATGAAGCTCAGTTCTTTGGAGATCTTTATGATTTCTGCTGTGAAGCTGCTGATCATGATGGCAAAAAAGTAATAGTTGCTGGACTAGATGGGGACTATTTGAGGAGGAGCTTTGGTTCTGTGCTTGATATAATTCCCCTTGCTGATTCTGTAACCAAGTTAACTTCTCGATGTGAACTTTGTGGGAAACCGGCTTTTTTCACATTACGGAAGACGGAGGAGATACAGACTGAAGTGATTGGCGGGGCTGATGTATACATGCCTGTATGTCGAAAGCACTATGTAAATGGACAAGTAGCCATTCAAGCTGCACGAGTTGTGCTGGAATCTCAAGTTCATTGCGGGTCGTGTGCGTAG

Protein Analysis

283

Amino Acids

30.89

Weight (kDa)

8.07

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TK PF00265 81 - 258 1.7e-53 Thymidine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23070
fragaria_vesca FvH4_3g00700
malus_domestica MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica Prupe.4G007900_v2.0.a1
pyrus_communis pycom10g21530
rosa_chinensis RchiOBHm_Chr5g0000951
rosa_laevigata RLG00000030907
rosa_multiflora Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa Rorug04G0388000
rosa_samantha Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana Rw5G000780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 747
AccII CGCG 1 cut(s) 215
AciI CCGC 3 cut(s) 215, 735, 834
AclI AACGTT 1 cut(s) 333
AcuI CTGAAG 2 cut(s) 63, 744
AcyI GRCGYC 1 cut(s) 218
AgsI TTSAA 6 cut(s) 15, 121, 206, 308, 442, 797
AhdI GACNNNNNGTC 1 cut(s) 217
AjiI CACGTC 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
AluBI AGCT 7 cut(s) 8, 200, 475, 500, 539, 603, 800
AluI AGCT 7 cut(s) 8, 200, 475, 500, 539, 603, 800
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 225
ApeKI GCWGC 4 cut(s) 229, 472, 539, 800
ArsI GACNNNNNNTTYG 2 cut(s) 439, 471
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 40, 254
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 202
BauI CACGAG 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 710
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 4 cut(s) 241, 484, 526, 787
BccI CCATC 4 cut(s) 317, 389, 545, 575
BciVI GTATCC 1 cut(s) 352
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 476, 578
BfuI GTATCC 1 cut(s) 352
BglII AGATCT 1 cut(s) 514
BisI GCNGC 5 cut(s) 216, 230, 473, 540, 801
BlsI GCNGC 5 cut(s) 217, 231, 474, 541, 802
Bme18I GGWCC 1 cut(s) 263
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 218
BsaWI WCCGGW 2 cut(s) 194, 239
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bse118I RCCGGY 2 cut(s) 225, 682
Bse3DI GCAATG 1 cut(s) 829
BseGI GGATG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 1 cut(s) 515
BseRI GAGGAG 3 cut(s) 610, 613, 725
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 4 cut(s) 241, 484, 526, 787
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 5 cut(s) 195, 226, 240, 276, 683
BslFI GGGAC 1 cut(s) 599
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 162, 202
Bsp143I GATC 2 cut(s) 514, 544
BspACI CCGC 3 cut(s) 215, 735, 834
BspCNI CTCAG 1 cut(s) 514
BspFNI CGCG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 829
BsrFI RCCGGY 2 cut(s) 225, 682
BssAI RCCGGY 2 cut(s) 225, 682
BssMI GATC 2 cut(s) 514, 544
BssNAI GTATAC 1 cut(s) 748
BssNI GRCGYC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 804
Bst1107I GTATAC 1 cut(s) 748
Bst2BI CACGAG 1 cut(s) 804
Bst6I CTCTTC 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 215
BstKTI GATC 2 cut(s) 517, 547
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 514, 544
BstMWI GCNNNNNNNGC 1 cut(s) 797
BstNSI RCATGY 1 cut(s) 754
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 4 cut(s) 241, 484, 526, 787
BstV2I GAAGAC 1 cut(s) 710
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BstZ17I GTATAC 1 cut(s) 748
BsuI GTATCC 1 cut(s) 352
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 547
Cfr10I RCCGGY 2 cut(s) 225, 682
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 2 cut(s) 207, 221
CviAII CATG 3 cut(s) 392, 548, 751
DdeI CTNAG 1 cut(s) 501
DpnI GATC 2 cut(s) 516, 546
DpnII GATC 2 cut(s) 514, 544
DriI GACNNNNNGTC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 181
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 63, 744
EcoICRI GAGCTC 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 3 cut(s) 395, 551, 754
FaqI GGGAC 1 cut(s) 599
FatI CATG 3 cut(s) 391, 547, 750
FauI CCCGC 2 cut(s) 728, 827
FauNDI CATATG 1 cut(s) 466
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 5 cut(s) 216, 230, 473, 540, 801
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 5 cut(s) 216, 230, 473, 540, 801
FspBI CTAG 2 cut(s) 476, 578
GluI GCNGC 5 cut(s) 216, 230, 473, 540, 801
HapII CCGG 5 cut(s) 195, 226, 240, 276, 683
HgaI GACGC 2 cut(s) 207, 221
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 3 cut(s) 395, 551, 754
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HinfI GANTC 5 cut(s) 247, 304, 377, 638, 818
HpaI GTTAAC 1 cut(s) 654
HpaII CCGG 5 cut(s) 195, 226, 240, 276, 683
HphI GGTGA 2 cut(s) 40, 254
Hpy166II GTNNAC 3 cut(s) 654, 668, 748
Hpy188I TCNGA 2 cut(s) 181, 313
Hpy188III TCNNGA 4 cut(s) 203, 458, 548, 660
Hpy8I GTNNAC 3 cut(s) 654, 668, 748
Hpy99I CGWCG 2 cut(s) 257, 260
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 252, 333
HpyCH4V TGCA 3 cut(s) 338, 464, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 797
HpyF3I CTNAG 1 cut(s) 501
HpySE526I ACGT 2 cut(s) 252, 333
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 3 cut(s) 395, 551, 754
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 544
KspAI GTTAAC 1 cut(s) 654
Kzo9I GATC 2 cut(s) 514, 544
LmnI GCTCC 3 cut(s) 197, 242, 600
LpnPI CCDG 9 cut(s) 208, 239, 253, 286, 289, 558, 696, 768, 800
Lsp1109I GCAGC 4 cut(s) 241, 484, 526, 787
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 476, 578
MaeII ACGT 2 cut(s) 252, 333
MaeIII GTNAC 3 cut(s) 329, 385, 643
MalI GATC 2 cut(s) 516, 546
MboI GATC 2 cut(s) 514, 544
MboII GAAGA 4 cut(s) 69, 168, 287, 715
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 162, 202
MluCI AATT 4 cut(s) 116, 130, 404, 624
MnlI CCTC 6 cut(s) 80, 94, 146, 588, 591, 703
Mph1103I ATGCAT 1 cut(s) 466
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 2 cut(s) 402, 653
MspI CCGG 5 cut(s) 195, 226, 240, 276, 683
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 797
NaeI GCCGGC 1 cut(s) 227
NdeI CATATG 1 cut(s) 466
NdeII GATC 2 cut(s) 514, 544
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 3 cut(s) 395, 551, 754
NmuCI GTSAC 1 cut(s) 385
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 1 cut(s) 754
PagI TCATGA 1 cut(s) 547
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 5 cut(s) 247, 304, 377, 638, 818
PkrI GCNGC 5 cut(s) 217, 231, 474, 541, 802
Psp124BI GAGCTC 1 cut(s) 202
Psp1406I AACGTT 1 cut(s) 333
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 514
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 402, 653
SatI GCNGC 5 cut(s) 216, 230, 473, 540, 801
Sau3AI GATC 2 cut(s) 514, 544
Sau96I GGNCC 1 cut(s) 263
SduI GDGCHC 2 cut(s) 162, 202
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 822
SmoI CTYRAG 1 cut(s) 822
Sse9I AATT 4 cut(s) 116, 130, 404, 624
SsiI CCGC 3 cut(s) 215, 735, 834
SspMI CTAG 2 cut(s) 476, 578
SstI GAGCTC 1 cut(s) 202
TaiI ACGT 2 cut(s) 255, 336
TaqI TCGA 4 cut(s) 321, 380, 661, 763
TasI AATT 4 cut(s) 116, 130, 404, 624
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 5 cut(s) 247, 304, 377, 638, 818
Tru1I TTAA 2 cut(s) 402, 653
Tru9I TTAA 2 cut(s) 402, 653
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 4 cut(s) 229, 472, 539, 800
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 35, 510, 818
TspGWI ACGGA 3 cut(s) 86, 715, 722
VpaK11BI GGWCC 1 cut(s) 263
XceI RCATGY 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 747
XspI CTAG 2 cut(s) 476, 578
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.