Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0014964

Physical Location & Seq

Genomic Coordinates Reverse (-)

106393 .. 107356

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000255.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgcagaggaataagatgtacttatcattaaatatttcctttggcagtaatgttgcagtaataaaatcaaacaaggatacaagatatggattggattcgattgtaacgcatgatggggttaaattgccttgctgggcattaccaaatctatcatcgttcaaacaaaagtttggtcttgatgcatatgagcagctagatgtaatcggtattgatgaagctcagttctttgaagatctttatgatttctgccgtgaagctgctgatcatgatggcaaaaaagtaatagttgctggactagatggggactatttgaggaggagctttggatctgtacttgatataatcccccttgctgattctgtaaccaagttaacttctcgatgtgaactttgtgggaagccagctttctttacgttacgaaagacagaggagatgcagacggaagtgattggcggggctgatgtatacatgcctgtatgtcgacagcactatgttggtggacaagtagccattcaagctgcacgagttgtcctggaatctcaagttgagtgtaggtcttgtgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PPR PPR_2 TK

Protein Analysis

188

Amino Acids

20.9

Weight (kDa)

5.4

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23070
fragaria_vesca	FvH4_3g00700
malus_domestica	MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica	Prupe.4G007900_v2.0.a1
pyrus_communis	pycom10g21530
rosa_chinensis	RchiOBHm_Chr5g0000951
rosa_laevigata	RLG00000030907
rosa_multiflora	Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa	Rorug04G0388000
rosa_samantha	Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana	Rw5G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	465, 481
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	334
AfaI	GTAC	2 cut(s)	20, 333
AgsI	TTSAA	3 cut(s)	160, 230, 515
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	6 cut(s)	193, 218, 257, 321, 404, 518
AluI	AGCT	6 cut(s)	193, 218, 257, 321, 404, 518
AlwI	GGATC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	190, 257, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
BauI	CACGAG	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	202, 244, 505
BccI	CCATC	3 cut(s)	107, 263, 293
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	533
BciVI	GTATCC	1 cut(s)	70
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	2 cut(s)	194, 296
BfuI	GTATCC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	3 cut(s)	191, 258, 519
BlsI	GCNGC	3 cut(s)	192, 259, 520
Bme1390I	CCNGG	1 cut(s)	533
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	169, 423
BpuEI	CTTGAG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	233
BseRI	GAGGAG	3 cut(s)	328, 331, 443
BseXI	GCAGC	3 cut(s)	202, 244, 505
BseYI	CCCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	232, 262, 326
BspACI	CCGC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	265
BspPI	GGATC	1 cut(s)	334
BssMI	GATC	3 cut(s)	232, 262, 326
BssNAI	GTATAC	1 cut(s)	466
BssSI	CACGAG	1 cut(s)	522
Bst1107I	GTATAC	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	235, 265, 329
BstMBI	GATC	3 cut(s)	232, 262, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	202, 244, 505
BstX2I	RGATCY	2 cut(s)	232, 326
BstYI	RGATCY	2 cut(s)	232, 326
BstZ17I	GTATAC	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	19, 332
CviAII	CATG	3 cut(s)	110, 266, 469
CviJI	RGCY	9 cut(s)	193, 218, 257, 321, 400, 404, 458, 509, 518
CviKI_1	RGCY	9 cut(s)	193, 218, 257, 321, 400, 404, 458, 509, 518
CviQI	GTAC	2 cut(s)	19, 332
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	234, 264, 328
DpnII	GATC	3 cut(s)	232, 262, 326
EcoRII	CCWGG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	184
FaeI	CATG	3 cut(s)	113, 269, 472
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	109, 265, 468
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	2 cut(s)	465, 481
Fnu4HI	GCNGC	3 cut(s)	191, 258, 519
Fsp4HI	GCNGC	3 cut(s)	191, 258, 519
FspBI	CTAG	2 cut(s)	194, 296
GluI	GCNGC	3 cut(s)	191, 258, 519
GsaI	CCCAGC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	113, 269, 472
HincII	GTYRAC	2 cut(s)	372, 482
HindII	GTYRAC	2 cut(s)	372, 482
HinfI	GANTC	3 cut(s)	95, 356, 536
HpaI	GTTAAC	1 cut(s)	372
Hpy166II	GTNNAC	5 cut(s)	372, 386, 466, 482, 500
Hpy188III	TCNNGA	3 cut(s)	176, 266, 378
Hpy8I	GTNNAC	5 cut(s)	372, 386, 466, 482, 500
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	5 cut(s)	4, 56, 182, 436, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	3 cut(s)	113, 269, 472
Ksp22I	TGATCA	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	232, 262, 326
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	6 cut(s)	118, 276, 414, 486, 518, 545
Lsp1109I	GCAGC	3 cut(s)	202, 244, 505
LweI	GCATC	2 cut(s)	169, 423
MaeI	CTAG	2 cut(s)	194, 296
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	3 cut(s)	103, 361, 414
MalI	GATC	3 cut(s)	234, 264, 328
MboI	GATC	3 cut(s)	232, 262, 326
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	2 cut(s)	232, 326
MluCI	AATT	1 cut(s)	122
MnlI	CCTC	3 cut(s)	306, 309, 421
Mph1103I	ATGCAT	1 cut(s)	184
MseI	TTAA	3 cut(s)	29, 120, 371
MspR9I	CCNGG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	3 cut(s)	232, 262, 326
NlaIII	CATG	3 cut(s)	113, 269, 472
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	1 cut(s)	472
PagI	TCATGA	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	95, 356, 536
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	192, 259, 520
Psp6I	CCWGG	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	531
PsuI	RGATCY	2 cut(s)	232, 326
RsaI	GTAC	2 cut(s)	20, 333
RsaNI	GTAC	2 cut(s)	19, 332
SalI	GTCGAC	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	29, 120, 371
SatI	GCNGC	3 cut(s)	191, 258, 519
Sau3AI	GATC	3 cut(s)	232, 262, 326
ScrFI	CCNGG	1 cut(s)	533
SetI	ASST	8 cut(s)	195, 220, 259, 323, 406, 416, 520, 557
SfaNI	GCATC	2 cut(s)	169, 423
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	453
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	2 cut(s)	194, 296
StyD4I	CCNGG	1 cut(s)	531
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	3 cut(s)	98, 379, 481
TasI	AATT	1 cut(s)	122
TatI	WGTACW	2 cut(s)	18, 331
TfiI	GAWTC	3 cut(s)	95, 356, 536
Tru1I	TTAA	3 cut(s)	29, 120, 371
Tru9I	TTAA	3 cut(s)	29, 120, 371
TseI	GCWGC	3 cut(s)	190, 257, 518
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	455
XceI	RCATGY	1 cut(s)	472
XmiI	GTMKAC	2 cut(s)	465, 481
XspI	CTAG	2 cut(s)	194, 296
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.