Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014964

Physical Location & Seq

Genomic Coordinates Reverse (-)

523909 .. 527863

Gene Structure 3955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG008200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTAGCTATTTCAAGGATGAAAGCCCTCATCTCAACCCACTGCATCTCCAAGACCACACCTTTATCTCTCTTTTCTTCAGCCTCTAAATCCATTCGATCCTACCCACCAACCCAATTCAGAACCCCAAATCTTCTCCGCCTAAAACCCAATACTTTTGTGCCCTATGCCTCTCTTTCTTCCGAAATAGCTCCCAACGGAGCTGTTGAAATGGATGCGGCTTCTCGCCGGCAACGTTCCGGTGAGATTCACGTCATCGTTGGCCCAATGTTTGCCGGAAAGACCACCACGCTGCTTCGCAGAATTCAATCCGAGAAAGGCGATGGCAGTAATGTTGCAGTAATAAAATCAAACAAGGATACAAGATATGGATTGGATTCGATTGTAACGCATGATGGGGTTAAATTGCCTTGCTGGGCATTACCAAATCTATCATCGTTCAAACAAAAGTTTGGTCTTGATGCATATGAGCAGCTAGATGTAATCGGTATTGATGAAGCTCAGTTCTTTGAGGATCTTTATGATTTCTGCCGTGAAGCTGCTGATCATGATGGCAAAAAAGTAATAGTTGCTGGACTAGATGGGGACTATTTGAGGAGGAGCTTTGGATCTGTGCTTGATATAATTCCCCTTGCTGATTCTGTAACCAAGTTAACTTCTCGATGCGAACTTTGTGGGAAACCGGCTTTCTTTACATTACGAAAGACGGAGGAGATGCAGACGGAAGTGATTGGCGGGGCTGATGTGTACATGCCTGTATGTCGACAGCACTATGTTAGTGGACAAGTAGCCATTCAAGCTGCACGAGTTGTCCTGGAATCTCAAGTTGAGTGTAGGTCTTGTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

282

Amino Acids

31.02

Weight (kDa)

8.37

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	81 - 258	2.5e-54	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23070
fragaria_vesca	FvH4_3g00700
malus_domestica	MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica	Prupe.4G007900_v2.0.a1
pyrus_communis	pycom10g21530
rosa_chinensis	RchiOBHm_Chr5g0000951
rosa_laevigata	RLG00000030907
rosa_multiflora	Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa	Rorug04G0388000
rosa_samantha	Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana	Rw5G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	763
AciI	CCGC	3 cut(s)	139, 218, 735
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	3 cut(s)	93, 522, 616
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	749
AgsI	TTSAA	5 cut(s)	15, 209, 308, 442, 797
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	813
AluBI	AGCT	8 cut(s)	8, 191, 203, 475, 500, 539, 603, 800
AluI	AGCT	8 cut(s)	8, 191, 203, 475, 500, 539, 603, 800
AlwI	GGATC	3 cut(s)	93, 522, 616
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	292, 472, 539, 800
ApoI	RAATTY	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	804
BbvI	GCAGC	4 cut(s)	279, 484, 526, 787
BccI	CCATC	4 cut(s)	317, 389, 545, 575
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	1 cut(s)	815
BciVI	GTATCC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	544
BfaI	CTAG	2 cut(s)	476, 578
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	5 cut(s)	219, 293, 473, 540, 801
BlsI	GCNGC	5 cut(s)	220, 294, 474, 541, 802
Bme1390I	CCNGG	1 cut(s)	815
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	815
BmsI	GCATC	5 cut(s)	54, 205, 451, 653, 705
BpuEI	CTTGAG	1 cut(s)	807
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	2 cut(s)	228, 682
BseBI	CCWGG	1 cut(s)	815
BseGI	GGATG	2 cut(s)	24, 220
BseMII	CTCAG	1 cut(s)	515
BseRI	GAGGAG	3 cut(s)	610, 613, 725
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	4 cut(s)	279, 484, 526, 787
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	1 cut(s)	264
BsiSI	CCGG	4 cut(s)	229, 240, 276, 683
BslFI	GGGAC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	98, 514, 544, 608
BspACI	CCGC	3 cut(s)	139, 218, 735
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	547
BspPI	GGATC	3 cut(s)	93, 522, 616
BsrFI	RCCGGY	2 cut(s)	228, 682
BsrGI	TGTACA	1 cut(s)	747
BssAI	RCCGGY	2 cut(s)	228, 682
BssMI	GATC	4 cut(s)	98, 514, 544, 608
BssSI	CACGAG	1 cut(s)	804
Bst2BI	CACGAG	1 cut(s)	804
Bst2UI	CCWGG	1 cut(s)	815
BstAUI	TGTACA	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	24, 220
BstKTI	GATC	4 cut(s)	101, 517, 547, 611
BstMBI	GATC	4 cut(s)	98, 514, 544, 608
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	279, 484, 526, 787
BstX2I	RGATCY	2 cut(s)	514, 608
BstYI	RGATCY	2 cut(s)	514, 608
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	24, 220
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	547
Cfr10I	RCCGGY	2 cut(s)	228, 682
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	748
CviAII	CATG	3 cut(s)	392, 548, 751
CviQI	GTAC	1 cut(s)	748
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	4 cut(s)	100, 516, 546, 610
DpnII	GATC	4 cut(s)	98, 514, 544, 608
EciI	GGCGGA	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	813
EcoT22I	ATGCAT	1 cut(s)	466
FaeI	CATG	3 cut(s)	395, 551, 754
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	3 cut(s)	391, 547, 750
FauI	CCCGC	1 cut(s)	728
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	763
Fnu4HI	GCNGC	5 cut(s)	219, 293, 473, 540, 801
FokI	GGATG	2 cut(s)	31, 227
Fsp4HI	GCNGC	5 cut(s)	219, 293, 473, 540, 801
FspBI	CTAG	2 cut(s)	476, 578
GluI	GCNGC	5 cut(s)	219, 293, 473, 540, 801
GsaI	CCCAGC	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	4 cut(s)	229, 240, 276, 683
Hin1II	CATG	3 cut(s)	395, 551, 754
HincII	GTYRAC	2 cut(s)	654, 764
HindII	GTYRAC	2 cut(s)	654, 764
HinfI	GANTC	4 cut(s)	247, 377, 638, 818
HpaI	GTTAAC	1 cut(s)	654
HpaII	CCGG	4 cut(s)	229, 240, 276, 683
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	4 cut(s)	654, 748, 764, 782
Hpy188I	TCNGA	3 cut(s)	122, 184, 313
Hpy188III	TCNNGA	3 cut(s)	458, 548, 660
Hpy8I	GTNNAC	4 cut(s)	654, 748, 764, 782
HpyCH4IV	ACGT	2 cut(s)	235, 252
HpyCH4V	TGCA	5 cut(s)	45, 338, 464, 718, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	2 cut(s)	235, 252
Hsp92II	CATG	3 cut(s)	395, 551, 754
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	98, 514, 544, 608
LmnI	GCTCC	3 cut(s)	196, 200, 600
LpnPI	CCDG	9 cut(s)	242, 253, 289, 400, 558, 696, 768, 800, 827
Lsp1109I	GCAGC	4 cut(s)	279, 484, 526, 787
LweI	GCATC	5 cut(s)	54, 205, 451, 653, 705
MaeI	CTAG	2 cut(s)	476, 578
MaeII	ACGT	2 cut(s)	235, 252
MaeIII	GTNAC	2 cut(s)	385, 643
MalI	GATC	4 cut(s)	100, 516, 546, 610
MboI	GATC	4 cut(s)	98, 514, 544, 608
MboII	GAAGA	3 cut(s)	69, 125, 171
MflI	RGATCY	2 cut(s)	514, 608
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	116, 303, 404, 624
MnlI	CCTC	7 cut(s)	38, 94, 181, 505, 588, 591, 703
Mph1103I	ATGCAT	1 cut(s)	466
MroNI	GCCGGC	1 cut(s)	228
MseI	TTAA	2 cut(s)	402, 653
MspI	CCGG	4 cut(s)	229, 240, 276, 683
MspR9I	CCNGG	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	815
MwoI	GCNNNNNNNGC	1 cut(s)	797
NaeI	GCCGGC	1 cut(s)	230
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	4 cut(s)	98, 514, 544, 608
NgoMIV	GCCGGC	1 cut(s)	228
NlaIII	CATG	3 cut(s)	395, 551, 754
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	1 cut(s)	754
PagI	TCATGA	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	230
PfeI	GAWTC	4 cut(s)	247, 377, 638, 818
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	5 cut(s)	220, 294, 474, 541, 802
Psp1406I	AACGTT	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	813
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	514, 608
RsaI	GTAC	1 cut(s)	749
RsaNI	GTAC	1 cut(s)	748
SalI	GTCGAC	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	402, 653
SatI	GCNGC	5 cut(s)	219, 293, 473, 540, 801
Sau3AI	GATC	4 cut(s)	98, 514, 544, 608
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	5 cut(s)	54, 205, 451, 653, 705
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
Sse9I	AATT	4 cut(s)	116, 303, 404, 624
SsiI	CCGC	3 cut(s)	139, 218, 735
SspMI	CTAG	2 cut(s)	476, 578
StyD4I	CCNGG	1 cut(s)	813
TaiI	ACGT	2 cut(s)	238, 255
TaqI	TCGA	4 cut(s)	97, 380, 661, 763
TasI	AATT	4 cut(s)	116, 303, 404, 624
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	4 cut(s)	247, 377, 638, 818
Tru1I	TTAA	2 cut(s)	402, 653
Tru9I	TTAA	2 cut(s)	402, 653
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	4 cut(s)	292, 472, 539, 800
TspDTI	ATGAA	2 cut(s)	35, 510
TspGWI	ACGGA	3 cut(s)	213, 722, 737
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	1 cut(s)	754
XmiI	GTMKAC	1 cut(s)	763
XspI	CTAG	2 cut(s)	476, 578
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.