Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014964

Physical Location & Seq

Genomic Coordinates Reverse (-)

410208 .. 414388

Gene Structure 4181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G007900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTAGCTATTTCAAGAATGAAGGCCCTCATCTCCGCCACAACGTTCTCAACCTACTCTGTTCCTCACATCTCCAAGACCACACCTTTGGCCCTCTCATCTTTAGCCTCTAAGTCCTTTTCATTCAACCCACCAACCCTTTTCCAGAACCCCAATCTTCTCCTCCCAAAACCCAATCTTTTTTTGCCCAAAACCTGCATTTCTTCAGTTCAGAACCGATGTATGCAAATGGAGACGGCTTCTCGCCAACGATCCGGTGAGATTCACGTGATCGTCGGCCCAATGTTCGCCGGCAAGACCACGACGCTTCTTCGTAAAGTTCAATCCGAGAGAGGCGATGGCAGAAATGTTGCTATAATTAAATCAAGCAAGGATACAAGATATGGATTGGATTCAATTGTGACGCATGATGGGGTCAAGATGCCGTGTTGGGCGTTAACACATCTATCAGCATTCAAACAAAAGTTGAGCCCTGATGCATATGATCAGCTAGATGTAATTGGTATTGATGAAGCCCAGTTCTTTGACGACCTGTATGATTTCTGTTCTGAAGCCGCTGATCATGATGGTAAAAAAGTAATAGTCGCTGGGCTAGATGGTGACTATTTAAGGAGGAGCTTTGGTTCTGTGCTAGATATAATTCCTCTTGCTGATTCTGTAACCAAGTTAACATCTCGATGTGAACTTTGTGGGAACCAGGCTTTCTTTACATTAAGAAAGACGGAGGAGATGCAGACTGAGCTTATTGGCGGGGCTGAAGTCTACATGCCTGTCTGCCGGCAGCACTATGTTGGTGGACAAGTAGCCATAGAAGCTGCGAGAGTTGTCCTGGAATCTCGAGTTCAGTGCGGTTCATATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

288

Amino Acids

31.57

Weight (kDa)

8.07

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23070
fragaria_vesca	FvH4_3g00700
malus_domestica	MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica	Prupe.4G007900_v2.0.a1
pyrus_communis	pycom10g21530
rosa_chinensis	RchiOBHm_Chr5g0000951
rosa_laevigata	RLG00000030907
rosa_multiflora	Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa	Rorug04G0388000
rosa_samantha	Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana	Rw5G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	762
AciI	CCGC	4 cut(s)	36, 555, 750, 849
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	1 cut(s)	246
AcuI	CTGAAG	3 cut(s)	189, 570, 777
AcvI	CACGTG	1 cut(s)	268
AgsI	TTSAA	5 cut(s)	15, 127, 323, 396, 457
AjnI	CCWGG	2 cut(s)	696, 828
AloI	GAACNNNNNNTCC	2 cut(s)	607, 639
AluBI	AGCT	5 cut(s)	8, 490, 618, 742, 815
AluI	AGCT	5 cut(s)	8, 490, 618, 742, 815
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	837
AoxI	GGCC	3 cut(s)	24, 90, 277
ApeKI	GCWGC	2 cut(s)	781, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AspS9I	GGNCC	3 cut(s)	25, 91, 278
AsuHPI	GGTGA	2 cut(s)	269, 611
AvaI	CYCGRG	1 cut(s)	837
BanII	GRGCYC	1 cut(s)	473
BbrPI	CACGTG	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	793, 802
BccI	CCATC	4 cut(s)	332, 404, 560, 590
BceAI	ACGGC	2 cut(s)	252, 409
BcgI	CGANNNNNNTGC	2 cut(s)	828, 862
BciT130I	CCWGG	2 cut(s)	698, 830
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	2 cut(s)	484, 559
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	3 cut(s)	491, 593, 632
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	555, 782, 816
BlsI	GCNGC	3 cut(s)	556, 783, 817
Bme1390I	CCNGG	2 cut(s)	698, 830
BmeT110I	CYCGRG	1 cut(s)	837
BmgT120I	GGNCC	3 cut(s)	25, 91, 278
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	2 cut(s)	698, 830
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	3 cut(s)	411, 466, 720
BmuI	ACTGGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bse118I	RCCGGY	2 cut(s)	290, 777
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	698, 830
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	3 cut(s)	152, 628, 740
BseXI	GCAGC	2 cut(s)	793, 802
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	3 cut(s)	26, 92, 279
BsiHKCI	CYCGRG	1 cut(s)	837
BsiSI	CCGG	3 cut(s)	255, 291, 778
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	26, 92, 279
BsoBI	CYCGRG	1 cut(s)	837
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	251, 270, 484, 559
BspACI	CCGC	4 cut(s)	36, 555, 750, 849
BspANI	GGCC	3 cut(s)	26, 92, 279
BspCNI	CTCAG	1 cut(s)	730
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	695
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	246
BsrFI	RCCGGY	2 cut(s)	290, 777
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	2 cut(s)	290, 777
BssMI	GATC	4 cut(s)	251, 270, 484, 559
Bst2UI	CCWGG	2 cut(s)	698, 830
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	292, 779
BstDEI	CTNAG	2 cut(s)	111, 738
BstKTI	GATC	4 cut(s)	254, 273, 487, 562
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	251, 270, 484, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	739, 812
BstNI	CCWGG	2 cut(s)	698, 830
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	696, 828
BstV1I	GCAGC	2 cut(s)	793, 802
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	26, 92, 279
BtgZI	GCGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	851
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	292, 779
CciI	TCATGA	1 cut(s)	562
Cfr10I	RCCGGY	2 cut(s)	290, 777
Cfr13I	GGNCC	3 cut(s)	25, 91, 278
CseI	GACGC	2 cut(s)	313, 412
CviAII	CATG	3 cut(s)	407, 563, 766
DdeI	CTNAG	2 cut(s)	111, 738
DpnI	GATC	4 cut(s)	253, 272, 486, 561
DpnII	GATC	4 cut(s)	251, 270, 484, 559
EciI	GGCGGA	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	473
Eco57I	CTGAAG	3 cut(s)	189, 570, 777
Eco72I	CACGTG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	696, 828
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	410, 566, 769
FatI	CATG	3 cut(s)	406, 562, 765
FauI	CCCGC	1 cut(s)	743
FauNDI	CATATG	2 cut(s)	481, 856
FbaI	TGATCA	2 cut(s)	484, 559
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	3 cut(s)	555, 782, 816
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	555, 782, 816
FspBI	CTAG	3 cut(s)	491, 593, 632
GluI	GCNGC	3 cut(s)	555, 782, 816
GsaI	CCCAGC	1 cut(s)	591
HaeIII	GGCC	3 cut(s)	26, 92, 279
HapII	CCGG	3 cut(s)	255, 291, 778
HgaI	GACGC	2 cut(s)	313, 412
Hin1II	CATG	3 cut(s)	410, 566, 769
HincII	GTYRAC	2 cut(s)	438, 669
HindII	GTYRAC	2 cut(s)	438, 669
HinfI	GANTC	4 cut(s)	262, 392, 653, 833
HpaI	GTTAAC	2 cut(s)	438, 669
HpaII	CCGG	3 cut(s)	255, 291, 778
HphI	GGTGA	2 cut(s)	269, 611
Hpy166II	GTNNAC	5 cut(s)	438, 669, 683, 763, 797
Hpy188I	TCNGA	3 cut(s)	213, 328, 550
Hpy188III	TCNNGA	6 cut(s)	15, 145, 418, 563, 675, 837
Hpy8I	GTNNAC	5 cut(s)	438, 669, 683, 763, 797
Hpy99I	CGWCG	2 cut(s)	278, 307
HpyAV	CCTTC	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	44, 267
HpyCH4V	TGCA	4 cut(s)	198, 226, 479, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	739, 812
HpyF3I	CTNAG	2 cut(s)	111, 738
HpySE526I	ACGT	2 cut(s)	44, 267
Hsp92II	CATG	3 cut(s)	410, 566, 769
KroI	GCCGGC	2 cut(s)	290, 777
KroNI	GCCGGC	2 cut(s)	292, 779
Ksp22I	TGATCA	2 cut(s)	484, 559
KspAI	GTTAAC	2 cut(s)	438, 669
Kzo9I	GATC	4 cut(s)	251, 270, 484, 559
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	2 cut(s)	793, 802
LweI	GCATC	3 cut(s)	411, 466, 720
MaeI	CTAG	3 cut(s)	491, 593, 632
MaeII	ACGT	2 cut(s)	44, 267
MaeIII	GTNAC	3 cut(s)	400, 599, 658
MalI	GATC	4 cut(s)	253, 272, 486, 561
MboI	GATC	4 cut(s)	251, 270, 484, 559
MboII	GAAGA	3 cut(s)	149, 195, 302
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	357, 396, 498, 639
MnlI	CCTC	9 cut(s)	38, 75, 104, 118, 173, 326, 606, 654, 718
Mph1103I	ATGCAT	1 cut(s)	481
MroNI	GCCGGC	2 cut(s)	290, 777
MseI	TTAA	5 cut(s)	360, 437, 608, 668, 713
MslI	CAYNNNNRTG	1 cut(s)	676
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	255, 291, 778
MspR9I	CCNGG	2 cut(s)	698, 830
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	2 cut(s)	698, 830
MwoI	GCNNNNNNNGC	2 cut(s)	739, 812
NaeI	GCCGGC	2 cut(s)	292, 779
NdeI	CATATG	2 cut(s)	481, 856
NdeII	GATC	4 cut(s)	251, 270, 484, 559
NgoMIV	GCCGGC	2 cut(s)	290, 777
NlaIII	CATG	3 cut(s)	410, 566, 769
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	2 cut(s)	400, 599
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	769
PaeR7I	CTCGAG	1 cut(s)	837
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	1 cut(s)	452
PdiI	GCCGGC	2 cut(s)	292, 779
PfeI	GAWTC	4 cut(s)	262, 392, 653, 833
PfoI	TCCNGGA	1 cut(s)	828
PkrI	GCNGC	3 cut(s)	556, 783, 817
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	268
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	696, 828
PspCI	CACGTG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	696, 828
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	3 cut(s)	25, 91, 278
RseI	CAYNNNNRTG	1 cut(s)	676
SaqAI	TTAA	5 cut(s)	360, 437, 608, 668, 713
SatI	GCNGC	3 cut(s)	555, 782, 816
Sau3AI	GATC	4 cut(s)	251, 270, 484, 559
Sau96I	GGNCC	3 cut(s)	25, 91, 278
ScrFI	CCNGG	2 cut(s)	698, 830
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	3 cut(s)	411, 466, 720
Sfr274I	CTCGAG	1 cut(s)	837
SlaI	CTCGAG	1 cut(s)	837
SmiMI	CAYNNNNRTG	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	837
SmoI	CTYRAG	1 cut(s)	837
Sse9I	AATT	4 cut(s)	357, 396, 498, 639
SsiI	CCGC	4 cut(s)	36, 555, 750, 849
SspMI	CTAG	3 cut(s)	491, 593, 632
StyD4I	CCNGG	2 cut(s)	696, 828
TaiI	ACGT	2 cut(s)	47, 270
TaqI	TCGA	2 cut(s)	676, 838
TasI	AATT	4 cut(s)	357, 396, 498, 639
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	4 cut(s)	262, 392, 653, 833
Tru1I	TTAA	5 cut(s)	360, 437, 608, 668, 713
Tru9I	TTAA	5 cut(s)	360, 437, 608, 668, 713
TscAI	CASTG	1 cut(s)	851
TseFI	GTSAC	2 cut(s)	400, 599
TseI	GCWGC	2 cut(s)	781, 815
Tsp45I	GTSAC	2 cut(s)	400, 599
TspDTI	ATGAA	4 cut(s)	35, 111, 525, 843
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	1 cut(s)	851
XceI	RCATGY	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	837
XmiI	GTMKAC	1 cut(s)	762
XspI	CTAG	3 cut(s)	491, 593, 632
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.