Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014964

Physical Location & Seq

Genomic Coordinates Reverse (-)

520636 .. 525032

Gene Structure 4397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG008200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTAGCTATTTCAAGGATGAAGGCGCTTATATCAACCCACTGCATCTCCAAGACCACACCTTTATCTCTCTTTTCTTCAGCCTCTAAATCCATTCGATCGTACCCACCAACCCAATTCAGAACCCCAAATCTTGTCCGCCTAAAACCCAATACTTTTGTGCCCTATGCCTCTCTTTCTTCCGAAATAGCTCCCAACGGAGCTGTTGAAATGGATGCGGCTTCTCGCCGGCAACGTTCCGGTGAGATTCACGTCATCGTTGGCCCAATGTTTGCCGGAAAGACCACCACGCTTCTTCGCAGAATTCAATCCGAGAAAGGCGATGGCAGTAATGTTGCTGTAATAAAATCAAACAAGGATACAAGATATGGATTGGATTCGATTGTAACGCATGATGGGGTTAGATTGCCTTGCTGGGCATTACCAAATCTATCATCGTTCAAACAGAAGTTTGGTCTTGATGCATATGAGCAGCTAGATGTAATCGGTATTGATGAAGCTCAGTTCTTTGAAGATCTTTATGATTTCTGCCGTGAAGCTGCTGATCATGATGGCAAAAAAGTAATAGTTGCTGGACTAGATGGGGACTATTTGAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

200

Amino Acids

22.12

Weight (kDa)

8.73

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	81 - 198	2.7e-30	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23070
fragaria_vesca	FvH4_3g00700
malus_domestica	MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica	Prupe.4G007900_v2.0.a1
pyrus_communis	pycom10g21530
rosa_chinensis	RchiOBHm_Chr5g0000951
rosa_laevigata	RLG00000030907
rosa_multiflora	Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa	Rorug04G0388000
rosa_samantha	Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana	Rw5G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	139, 218
AclI	AACGTT	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	5 cut(s)	15, 209, 308, 442, 512
AjiI	CACGTC	1 cut(s)	253
AluBI	AGCT	6 cut(s)	8, 191, 203, 475, 500, 539
AluI	AGCT	6 cut(s)	8, 191, 203, 475, 500, 539
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	472, 539
ApoI	RAATTY	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	484, 526
BccI	CCATC	4 cut(s)	317, 389, 545, 575
BceAI	ACGGC	1 cut(s)	516
BciVI	GTATCC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	544
BfaI	CTAG	2 cut(s)	476, 578
BfoI	RGCGCY	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	3 cut(s)	219, 473, 540
BlsI	GCNGC	3 cut(s)	220, 474, 541
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	263
BmsI	GCATC	3 cut(s)	54, 205, 451
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	1 cut(s)	228
BseGI	GGATG	2 cut(s)	24, 220
BseMII	CTCAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	484, 526
BseYI	CCCAGC	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	229, 240, 276
BslFI	GGGAC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	98, 514, 544
BspACI	CCGC	2 cut(s)	139, 218
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	3 cut(s)	98, 514, 544
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	24, 220
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	101, 517, 547
BstMBI	GATC	3 cut(s)	98, 514, 544
BstMCI	CGRYCG	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	484, 526
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	24, 220
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	392, 548
CviJI	RGCY	9 cut(s)	8, 83, 191, 203, 221, 264, 475, 500, 539
CviKI_1	RGCY	9 cut(s)	8, 83, 191, 203, 221, 264, 475, 500, 539
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	3 cut(s)	100, 516, 546
DpnII	GATC	3 cut(s)	98, 514, 544
EciI	GGCGGA	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	466
FaeI	CATG	2 cut(s)	395, 551
FaiI	YATR	8 cut(s)	32, 168, 369, 393, 466, 468, 522, 549
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	2 cut(s)	391, 547
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	219, 473, 540
FokI	GGATG	2 cut(s)	31, 227
Fsp4HI	GCNGC	3 cut(s)	219, 473, 540
FspBI	CTAG	2 cut(s)	476, 578
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	219, 473, 540
GsaI	CCCAGC	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	3 cut(s)	229, 240, 276
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	395, 551
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	247, 377
HpaII	CCGG	3 cut(s)	229, 240, 276
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	122, 184, 313
Hpy188III	TCNNGA	2 cut(s)	458, 548
HpyAV	CCTTC	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	235, 252
HpyCH4V	TGCA	2 cut(s)	45, 464
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	2 cut(s)	235, 252
Hsp92II	CATG	2 cut(s)	395, 551
HspAI	GCGC	1 cut(s)	26
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	98, 514, 544
LmnI	GCTCC	2 cut(s)	196, 200
LpnPI	CCDG	5 cut(s)	242, 253, 289, 400, 558
Lsp1109I	GCAGC	2 cut(s)	484, 526
LweI	GCATC	3 cut(s)	54, 205, 451
MaeI	CTAG	2 cut(s)	476, 578
MaeII	ACGT	2 cut(s)	235, 252
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	100, 516, 546
MboI	GATC	3 cut(s)	98, 514, 544
MboII	GAAGA	4 cut(s)	69, 171, 287, 524
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	2 cut(s)	116, 303
MnlI	CCTC	3 cut(s)	94, 181, 588
Mph1103I	ATGCAT	1 cut(s)	466
MroNI	GCCGGC	1 cut(s)	228
MspI	CCGG	3 cut(s)	229, 240, 276
NaeI	GCCGGC	1 cut(s)	230
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	3 cut(s)	98, 514, 544
NgoMIV	GCCGGC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	395, 551
NsiI	ATGCAT	1 cut(s)	466
PagI	TCATGA	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	247, 377
PkrI	GCNGC	3 cut(s)	220, 474, 541
Ple19I	CGATCG	1 cut(s)	101
Psp1406I	AACGTT	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	514
PvuI	CGATCG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	3 cut(s)	219, 473, 540
Sau3AI	GATC	3 cut(s)	98, 514, 544
Sau96I	GGNCC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	54, 205, 451
Sse9I	AATT	2 cut(s)	116, 303
SsiI	CCGC	2 cut(s)	139, 218
SspMI	CTAG	2 cut(s)	476, 578
TaiI	ACGT	2 cut(s)	238, 255
TaqI	TCGA	2 cut(s)	97, 380
TasI	AATT	2 cut(s)	116, 303
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	247, 377
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	2 cut(s)	472, 539
TspDTI	ATGAA	2 cut(s)	35, 510
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	303
XspI	CTAG	2 cut(s)	476, 578
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.