Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014964

Physical Location & Seq

Genomic Coordinates Forward (+)

7741792 .. 7742978

Gene Structure 1187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTTGGTGTTTCGATGAGAACATTAATCTCACCATCTCTTGCTCCCTTCTCTCTTCATCTCCATAAACCCTCTCTCTTCTCCACCGCTCTTCGCTTCTCCTTCTCAATCAACAACATAACCCCCACAAATTCACCTCCTTCCACCATTTCCACCAGAAAGCTACAAACGAAAGCGACGAGGGTAACATCATCATCATCATCTCAGCCGCTCTCCTCCTCATCTCCCGGCGAAATCCACGTCGTAGTCGGTCCAATGTTCTCCGGTAAAACAACAACACTTCTCCGCCGTATACTCGCCGAAAGAGAAACCGGTAAAAGAATCGCAATCATCAAATCCAACAAAGACACAAGATACTGCACCGAATCAATAGTTACTCACGACGGTGAGAAATACCCTTGCTGGTCACTCCCCGATCTCTCGTCCTTCAAAGAGAGATTCGGATTCGACGACTACGAGAATCGATTAGATGTGATTGGAATCGACGAAGCTCAATTCTTCGGAGATCTTTACGAGTTTTGCCGTGAAGCTGCTGATAAAGAGGGTAAAACTGTAATTGTTGCTGGATTGGATGGTGATTTTATGAGGAGGAGGTTTGGTTCGGTTCTTGATTTGATTCCGATTGCGGATACGGTTACGAAGCTGACGTCACGGTGTGAGGTTTGTGGGAAGAGAGCTTTGTTTACGATGAGGAAGACGGAGGAGAAAGAGACGGAGTTGATCGGTGGTGCTGAAGTTTATATGCCTGTGTGTAGGAGTCATTACGTTTGCGGTCAAAACGTTTTGGAAACCGCTCGTGCCGTTTTGGATTCAAGCAATAATCATAGTGTTGTAGCAAGTTCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

282

Amino Acids

31.23

Weight (kDa)

8.43

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	77 - 255	9.8e-55	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23070
fragaria_vesca	FvH4_3g00700
malus_domestica	MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica	Prupe.4G007900_v2.0.a1
pyrus_communis	pycom10g21530
rosa_chinensis	RchiOBHm_Chr5g0000951
rosa_laevigata	RLG00000030907
rosa_multiflora	Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa	Rorug04G0388000
rosa_samantha	Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana	Rw5G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	650
AccBSI	CCGCTC	3 cut(s)	89, 211, 794
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	6 cut(s)	87, 209, 286, 626, 771, 792
AclI	AACGTT	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	647
AdeI	CACNNNGTG	1 cut(s)	656
AgeI	ACCGGT	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	430, 813
AjiI	CACGTC	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	384
AloI	GAACNNNNNNTCC	2 cut(s)	583, 615
AluBI	AGCT	5 cut(s)	163, 491, 530, 643, 677
AluI	AGCT	5 cut(s)	163, 491, 530, 643, 677
Alw26I	GTCTC	1 cut(s)	704
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	4 cut(s)	225, 257, 632, 664
AseI	ATTAAT	1 cut(s)	26
AsiGI	ACCGGT	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	4 cut(s)	24, 126, 398, 587
AvaII	GGWCC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	2 cut(s)	43, 566
BceAI	ACGGC	3 cut(s)	273, 507, 785
BciVI	GTATCC	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	704
BfuI	GTATCC	1 cut(s)	622
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	2 cut(s)	209, 531
BlsI	GCNGC	2 cut(s)	210, 532
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	647
BsaWI	WCCGGW	2 cut(s)	263, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bse118I	RCCGGY	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	479
BseCI	ATCGAT	1 cut(s)	463
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	5 cut(s)	205, 208, 601, 604, 716
BseXI	GCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	228, 264, 312
BsmAI	GTCTC	1 cut(s)	704
BsmBI	CGTCTC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	415, 505, 720
BspACI	CCGC	6 cut(s)	87, 209, 286, 626, 771, 792
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	96
BsrBI	CCGCTC	3 cut(s)	89, 211, 794
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssMI	GATC	3 cut(s)	415, 505, 720
BssNAI	GTATAC	1 cut(s)	293
BssNI	GRCGYC	1 cut(s)	647
BssSI	CACGAG	1 cut(s)	795
Bst1107I	GTATAC	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	795
Bst4CI	ACNGT	4 cut(s)	386, 553, 634, 654
Bst6I	CTCTTC	4 cut(s)	60, 83, 96, 665
BstACI	GRCGYC	1 cut(s)	647
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	577
BstKTI	GATC	3 cut(s)	418, 508, 723
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	3 cut(s)	415, 505, 720
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BstZ17I	GTATAC	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	622
BsuTUI	ATCGAT	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	463
CspAI	ACCGGT	1 cut(s)	311
CviJI	RGCY	6 cut(s)	163, 208, 491, 530, 643, 677
CviKI_1	RGCY	6 cut(s)	163, 208, 491, 530, 643, 677
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	3 cut(s)	417, 507, 722
DpnII	GATC	3 cut(s)	415, 505, 720
DraIII	CACNNNGTG	1 cut(s)	656
Eam1104I	CTCTTC	4 cut(s)	60, 83, 96, 665
EarI	CTCTTC	4 cut(s)	60, 83, 96, 665
EciI	GGCGGA	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	753
Esp3I	CGTCTC	1 cut(s)	704
FaiI	YATR	7 cut(s)	66, 119, 293, 584, 741, 743, 825
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	209, 531
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	209, 531
GluI	GCNGC	2 cut(s)	209, 531
HapII	CCGG	3 cut(s)	228, 264, 312
Hin1I	GRCGYC	1 cut(s)	647
HinfI	GANTC	9 cut(s)	321, 365, 438, 444, 460, 480, 616, 757, 809
HpaII	CCGG	3 cut(s)	228, 264, 312
HphI	GGTGA	4 cut(s)	24, 126, 398, 587
Hpy166II	GTNNAC	3 cut(s)	293, 684, 842
Hpy188I	TCNGA	3 cut(s)	443, 503, 621
Hpy188III	TCNNGA	2 cut(s)	380, 608
Hpy8I	GTNNAC	3 cut(s)	293, 684, 842
Hpy99I	CGWCG	5 cut(s)	181, 245, 386, 452, 488
HpyAV	CCTTC	4 cut(s)	58, 112, 150, 436
HpyCH4III	ACNGT	4 cut(s)	386, 553, 634, 654
HpyCH4IV	ACGT	4 cut(s)	240, 647, 765, 780
HpyCH4V	TGCA	1 cut(s)	360
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	4 cut(s)	240, 647, 765, 780
Hsp92I	GRCGYC	1 cut(s)	647
Kzo9I	GATC	3 cut(s)	415, 505, 720
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	169, 241, 277, 325, 388, 549, 759
Lsp1109I	GCAGC	1 cut(s)	517
MaeII	ACGT	4 cut(s)	240, 647, 765, 780
MaeIII	GTNAC	5 cut(s)	184, 373, 405, 634, 648
MalI	GATC	3 cut(s)	417, 507, 722
MbiI	CCGCTC	3 cut(s)	89, 211, 794
MboI	GATC	3 cut(s)	415, 505, 720
MboII	GAAGA	6 cut(s)	47, 70, 83, 490, 682, 706
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	3 cut(s)	130, 494, 555
MlyI	GAGTC	1 cut(s)	766
MmeI	TCCRAC	1 cut(s)	363
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	3 cut(s)	228, 264, 312
MspR9I	CCNGG	1 cut(s)	228
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	415, 505, 720
NmuCI	GTSAC	2 cut(s)	405, 648
OliI	CACNNNNGTG	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	4 cut(s)	176, 447, 453, 644
PfeI	GAWTC	8 cut(s)	321, 365, 438, 444, 460, 480, 616, 809
PinAI	ACCGGT	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	210, 532
PleI	GAGTC	1 cut(s)	765
PpsI	GAGTC	1 cut(s)	765
PshBI	ATTAAT	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	780
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	2 cut(s)	209, 531
Sau3AI	GATC	3 cut(s)	415, 505, 720
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	130, 494, 555
SsiI	CCGC	6 cut(s)	87, 209, 286, 626, 771, 792
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	4 cut(s)	386, 553, 634, 654
TaiI	ACGT	4 cut(s)	243, 650, 768, 783
TaqI	TCGA	4 cut(s)	14, 447, 463, 483
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	130, 494, 555
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	8 cut(s)	321, 365, 438, 444, 460, 480, 616, 809
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	2 cut(s)	405, 648
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	2 cut(s)	405, 648
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	2 cut(s)	713, 728
VpaK11BI	GGWCC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	292
ZraI	GACGTC	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.