Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014964

Physical Location & Seq

Genomic Coordinates Reverse (-)

615351 .. 619209

Gene Structure 3859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAGGCCCTCATCTCAACCCACTGCATCTCCAAGACCACACCTTTATCTCTCTTTTCTTCAGCCTCTAAATCCATTCGATCCTACCCACCAACCCAATTCAGAACCCCAAATCTTGTCCGCCTAAAACCCAATACTTTTGTGCCCTATGCCTCTCTTTCTTCCGAAATAGCTCCCAGCGGAGCTGTTGAAATGGATGCGGCTTCTCGCCGGCAACGTTCCGGTGAGATTCACGTCATCGTTGGCCCAATGTTTGCCGGAAAGACCACCACGCTTCTTCGCAGAATTCAATCCGAGAAAGGCGATGGCAGTAATGTTGCAGTAATAAAATCAAACAAGGATACAAGATATGGATTGGATTCGATTGTAACGCATGATGGGGTTAAATTGCCTTGCTGGGCATTACCAAACCTATCATCGTTCAAACAAAAGTTTGGTCTTGATGCATATGAGCAGCTAGATGTAATCGGTATTGATGAAGCTCAGTTCTTTGAGGATCTTTATGATTTCTGCCGTGAAGCTGCTGATCATGATGGCAAAAAAGTAATAGTTGCTGGACTAGATGGGGACTATTTGAGGAGGAGCTTTGGATCTGTGCTTGATATAATTCCCCTTGCTGATTCTGTAACCAAGTTAACTTCTCGATGCGAACTTTGTGGGAAACCGGCTTTCTTTACATTACGAAAGACGGAGGAGATGCAGACGGAAGTGATTGGCGGCGCTGATGTGTACATGCCTGTATGTCGACAGCACTATGTTAGTGGACAAGTAGCCATTCAAGCTGCACGAGTTGTCCTGGAATCTCAAGTTCAGTGTAGGTCTTGTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

30.31

Weight (kDa)

8.37

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	75 - 252	2.3e-54	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23070
fragaria_vesca	FvH4_3g00700
malus_domestica	MD10G1258800.v1.1 MD10G1335800.v1.1
prunus_persica	Prupe.4G007900_v2.0.a1
pyrus_communis	pycom10g21530
rosa_chinensis	RchiOBHm_Chr5g0000951
rosa_laevigata	RLG00000030907
rosa_multiflora	Rmu_sc0000255.1_g000020 Rmu_sc0019885.1_g000003
rosa_rugosa	Rorug04G0388000
rosa_samantha	Rh5AG007500 Rh5BG009600 Rh5CG008200 Rh5DG008200
rosa_wichuraiana	Rw5G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	745
AciI	CCGC	4 cut(s)	121, 180, 200, 717
AclI	AACGTT	1 cut(s)	217
AclWI	GGATC	3 cut(s)	75, 504, 598
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	731
AgsI	TTSAA	4 cut(s)	191, 290, 424, 779
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	795
AluBI	AGCT	7 cut(s)	173, 185, 457, 482, 521, 585, 782
AluI	AGCT	7 cut(s)	173, 185, 457, 482, 521, 585, 782
AlwI	GGATC	3 cut(s)	75, 504, 598
AoxI	GGCC	2 cut(s)	6, 244
ApeKI	GCWGC	3 cut(s)	454, 521, 782
ApoI	RAATTY	1 cut(s)	285
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	2 cut(s)	7, 245
AsuHPI	GGTGA	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	147
BauI	CACGAG	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	466, 508, 769
BccI	CCATC	4 cut(s)	299, 371, 527, 557
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	1 cut(s)	797
BciVI	GTATCC	1 cut(s)	334
BclI	TGATCA	1 cut(s)	526
BfaI	CTAG	2 cut(s)	458, 560
BfoI	RGCGCY	1 cut(s)	723
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	5 cut(s)	201, 455, 522, 718, 783
BlsI	GCNGC	5 cut(s)	202, 456, 523, 719, 784
Bme1390I	CCNGG	1 cut(s)	797
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	7, 245
BmrFI	CCNGG	1 cut(s)	797
BmsI	GCATC	5 cut(s)	36, 187, 433, 635, 687
BpuEI	CTTGAG	1 cut(s)	789
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse118I	RCCGGY	2 cut(s)	210, 664
BseBI	CCWGG	1 cut(s)	797
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	497
BseRI	GAGGAG	3 cut(s)	592, 595, 707
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	466, 508, 769
BseYI	CCCAGC	2 cut(s)	176, 396
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	8, 246
BsiSI	CCGG	4 cut(s)	211, 222, 258, 665
BslFI	GGGAC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	581
BsnI	GGCC	2 cut(s)	8, 246
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	80, 496, 526, 590
BspACI	CCGC	4 cut(s)	121, 180, 200, 717
BspANI	GGCC	2 cut(s)	8, 246
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	529
BspPI	GGATC	3 cut(s)	75, 504, 598
BsrFI	RCCGGY	2 cut(s)	210, 664
BsrGI	TGTACA	1 cut(s)	729
BssAI	RCCGGY	2 cut(s)	210, 664
BssMI	GATC	4 cut(s)	80, 496, 526, 590
BssSI	CACGAG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	797
BstAUI	TGTACA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	723
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	4 cut(s)	83, 499, 529, 593
BstMBI	GATC	4 cut(s)	80, 496, 526, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	779
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	795
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	466, 508, 769
BstX2I	RGATCY	2 cut(s)	496, 590
BstYI	RGATCY	2 cut(s)	496, 590
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	8, 246
BtgZI	GCGATG	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 818
Cac8I	GCNNGC	1 cut(s)	212
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	722
Cfr10I	RCCGGY	2 cut(s)	210, 664
Cfr13I	GGNCC	2 cut(s)	7, 245
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	3 cut(s)	374, 530, 733
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	4 cut(s)	82, 498, 528, 592
DpnII	GATC	4 cut(s)	80, 496, 526, 590
EciI	GGCGGA	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	795
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	3 cut(s)	377, 533, 736
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	3 cut(s)	373, 529, 732
FauNDI	CATATG	1 cut(s)	448
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	745
Fnu4HI	GCNGC	5 cut(s)	201, 455, 522, 718, 783
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	5 cut(s)	201, 455, 522, 718, 783
FspBI	CTAG	2 cut(s)	458, 560
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	5 cut(s)	201, 455, 522, 718, 783
GsaI	CCCAGC	2 cut(s)	180, 400
HaeII	RGCGCY	1 cut(s)	723
HaeIII	GGCC	2 cut(s)	8, 246
HapII	CCGG	4 cut(s)	211, 222, 258, 665
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	3 cut(s)	377, 533, 736
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	2 cut(s)	636, 746
HindII	GTYRAC	2 cut(s)	636, 746
HinfI	GANTC	4 cut(s)	229, 359, 620, 800
HpaI	GTTAAC	1 cut(s)	636
HpaII	CCGG	4 cut(s)	211, 222, 258, 665
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	4 cut(s)	636, 730, 746, 764
Hpy188I	TCNGA	3 cut(s)	104, 166, 295
Hpy188III	TCNNGA	3 cut(s)	440, 530, 642
Hpy8I	GTNNAC	4 cut(s)	636, 730, 746, 764
HpyCH4IV	ACGT	2 cut(s)	217, 234
HpyCH4V	TGCA	5 cut(s)	27, 320, 446, 700, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	779
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	217, 234
Hsp92II	CATG	3 cut(s)	377, 533, 736
HspAI	GCGC	1 cut(s)	720
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	636
Kzo9I	GATC	4 cut(s)	80, 496, 526, 590
LmnI	GCTCC	3 cut(s)	178, 182, 582
Lsp1109I	GCAGC	3 cut(s)	466, 508, 769
LweI	GCATC	5 cut(s)	36, 187, 433, 635, 687
MaeI	CTAG	2 cut(s)	458, 560
MaeII	ACGT	2 cut(s)	217, 234
MaeIII	GTNAC	2 cut(s)	367, 625
MalI	GATC	4 cut(s)	82, 498, 528, 592
MboI	GATC	4 cut(s)	80, 496, 526, 590
MboII	GAAGA	3 cut(s)	51, 153, 269
MflI	RGATCY	2 cut(s)	496, 590
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	4 cut(s)	98, 285, 386, 606
MnlI	CCTC	7 cut(s)	20, 76, 163, 487, 570, 573, 685
Mph1103I	ATGCAT	1 cut(s)	448
MroNI	GCCGGC	1 cut(s)	210
MseI	TTAA	2 cut(s)	384, 635
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	4 cut(s)	211, 222, 258, 665
MspR9I	CCNGG	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	797
MwoI	GCNNNNNNNGC	1 cut(s)	779
NaeI	GCCGGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	4 cut(s)	80, 496, 526, 590
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	3 cut(s)	377, 533, 736
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	736
PagI	TCATGA	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	212
PfeI	GAWTC	4 cut(s)	229, 359, 620, 800
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	5 cut(s)	202, 456, 523, 719, 784
Psp1406I	AACGTT	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	795
PspFI	CCCAGC	2 cut(s)	176, 396
PspGI	CCWGG	1 cut(s)	795
PspPI	GGNCC	2 cut(s)	7, 245
PsuI	RGATCY	2 cut(s)	496, 590
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
SalI	GTCGAC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	384, 635
SatI	GCNGC	5 cut(s)	201, 455, 522, 718, 783
Sau3AI	GATC	4 cut(s)	80, 496, 526, 590
Sau96I	GGNCC	2 cut(s)	7, 245
ScrFI	CCNGG	1 cut(s)	797
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	5 cut(s)	36, 187, 433, 635, 687
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
Sse9I	AATT	4 cut(s)	98, 285, 386, 606
SsiI	CCGC	4 cut(s)	121, 180, 200, 717
SspMI	CTAG	2 cut(s)	458, 560
StyD4I	CCNGG	1 cut(s)	795
TaiI	ACGT	2 cut(s)	220, 237
TaqI	TCGA	4 cut(s)	79, 362, 643, 745
TasI	AATT	4 cut(s)	98, 285, 386, 606
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	2 cut(s)	203, 720
TfiI	GAWTC	4 cut(s)	229, 359, 620, 800
Tru1I	TTAA	2 cut(s)	384, 635
Tru9I	TTAA	2 cut(s)	384, 635
TscAI	CASTG	2 cut(s)	29, 818
TseI	GCWGC	3 cut(s)	454, 521, 782
TspDTI	ATGAA	2 cut(s)	17, 492
TspGWI	ACGGA	2 cut(s)	704, 719
TspRI	CASTG	2 cut(s)	29, 818
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	745
XspI	CTAG	2 cut(s)	458, 560
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.