Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019170

Physical Location & Seq

Genomic Coordinates Reverse (-)

551177 .. 552271

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATAGTTGTAGGATTTGTTGAAAATGAATATCTGAAGACCAAATTGTTGATCTTGTATGCAAAATCAGGGGATTTAGGAACTGCTCACTATTTTTTTGATAAGTTGCTCGAGAAAAGCTTGGTTTCATGGAATGCAATAATTGCAGGGTACGTTCAAAACGGGCATGAAGATGTGGGGTTGAATCTTTATCACAAGATGAGACAGAGTGGTTTTACACCAGACCAATATACCTTTGCTTCAGTCTTCAGGGCATGTGCCACTCTGGCAACTCTGGAGGATGGGAAGCAAGCCCACGGTGTCATGGTAAAATGCCAAATTATAGAGAATGTTGTAGTCAATAGTGCCCTCATGGATATGTACTTTAAATGTAGTGATTTATCTGATGGGCATAGGGTATTTGATACATCTCAAAATAGGAATGCCATTACCTGGACTGCTCTGATATCTGGGTATGGTCAACATGGAAGAGTTCAAGAGGTCTTAGATTTTTTTCATAGGATGAAAGCTGAAGGTATCAGGCCAAACTATGTTACTTTTATTGCAGTTCTTTCTGCATGTAGTCATGGAGGTTTGGCTAACGAGGCTTGGGAGTATTTTTCTTCCATGACAAGAGATTATGGAATTCAGCCAAGAGGACAGCATTATGCAGCCTTGGTTGACCTTTTAGGACGTGCTGGGAGGTTAGAAGAAGCCTATGAATTTGTTATGAACTCTCCTTGTAAGGAGCACTCAGTGATGTGGGGTGCTTTTCTTTGGGCTTGTAGAATTCATGGAAACAGAGACTTGTTGAACCTTGCAGCAAAGCAGTACTTTAAACTGGAGCCAGAGAATGCTGGAAAGTATGTTGTCCTGTCTAATGCTTATGCCACCTTTGGGTTGTGGGACAATGTTGCTAAGCTTAGGGCTAAGATGAGTGATTCAGGGATGATAAAGGAGCCTGCCTACAGCAAACTAGAGGTTCAGAGGGAGACCCACTTCTTTCTTAAGGGTGATAAGTATCACAAACAGTCCAAGGAGATTTACGAGATGGTTGAATTGATTGACTACTCTCTAAAGGATTCAGGCTATGTTCCTTATTTTAGTTTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PPR PPR_2 TK

Protein Analysis

365

Amino Acids

41.34

Weight (kDa)

6.67

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	40 - 87	8.2e-12	PPR repeat family
PPR_2	PF13041	141 - 188	6.9e-12	PPR repeat family
PPR_3	PF13812	141 - 187	1.7e-07	Pentatricopeptide repeat domain
PPR	PF01535	143 - 173	3.4e-09	PPR repeat
E_motif	PF20431	258 - 318	1.1e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16470
fragaria_vesca	FvH4_3g00700
prunus_persica	Prupe.4G008000_v2.0.a1
pyrus_communis	pycom10g28540
rosa_laevigata	RLG00000030908
rosa_multiflora	Rmu_sc0019885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075320
rosa_rugosa	Rorug04G0388000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AcsI	RAATTY	3 cut(s)	624, 701, 768
AcuI	CTGAAG	4 cut(s)	56, 225, 232, 531
AdeI	CACNNNGTG	1 cut(s)	736
AfaI	GTAC	3 cut(s)	152, 362, 812
AfiI	CCNNNNNNNGG	2 cut(s)	432, 876
AflII	CTTAAG	1 cut(s)	986
AgsI	TTSAA	6 cut(s)	23, 158, 184, 476, 793, 1037
AjiI	CACGTC	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	4 cut(s)	120, 509, 901, 1092
AluI	AGCT	4 cut(s)	120, 509, 901, 1092
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	3 cut(s)	196, 777, 965
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	650, 800
ApoI	RAATTY	3 cut(s)	624, 701, 768
AsuHPI	GGTGA	1 cut(s)	1004
AvaI	CYCGRG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	349
BbsI	GAAGAC	2 cut(s)	44, 238
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	662, 812
BccI	CCATC	3 cut(s)	275, 380, 1024
BciT130I	CCWGG	1 cut(s)	433
BcoDI	GTCTC	3 cut(s)	196, 777, 965
BfaI	CTAG	1 cut(s)	956
BfmI	CTRYAG	1 cut(s)	946
BfrI	CTTAAG	1 cut(s)	986
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	651, 801
BlpI	GCTNAGC	1 cut(s)	897
BlsI	GCNGC	2 cut(s)	652, 802
BmcAI	AGTACT	1 cut(s)	812
Bme1390I	CCNGG	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	674
BmiI	GGNNCC	2 cut(s)	825, 939
BmrFI	CCNGG	1 cut(s)	433
BpiI	GAAGAC	2 cut(s)	44, 238
BpmI	CTGGAG	2 cut(s)	296, 842
Bpu10I	CCTNAGC	1 cut(s)	902
Bpu1102I	GCTNAGC	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	999
BsaI	GGTCTC	1 cut(s)	965
BsaJI	CCNNGG	3 cut(s)	295, 654, 1014
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 876
Bse1I	ACTGG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	999
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	295, 654, 1014
BseGI	GGATG	3 cut(s)	286, 507, 933
BseJI	GATNNNNATC	1 cut(s)	999
BseLI	CCNNNNNNNGG	2 cut(s)	432, 876
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	662, 812
BseYI	CCCAGC	1 cut(s)	677
BshFI	GGCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	732
BsiHKCI	CYCGRG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	2 cut(s)	432, 876
BsmAI	GTCTC	3 cut(s)	196, 777, 965
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	3 cut(s)	139, 427, 838
BsnI	GGCC	1 cut(s)	523
Bso31I	GGTCTC	1 cut(s)	965
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	349, 732
Bsp143I	GATC	1 cut(s)	51
Bsp1720I	GCTNAGC	1 cut(s)	897
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	746
BspLI	GGNNCC	2 cut(s)	825, 939
BspTI	CTTAAG	1 cut(s)	986
BspTNI	GGTCTC	1 cut(s)	965
BsrI	ACTGG	1 cut(s)	825
BssECI	CCNNGG	3 cut(s)	295, 654, 1014
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	654, 1014
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	299, 1011
Bst6I	CTCTTC	1 cut(s)	463
BstAFI	CTTAAG	1 cut(s)	986
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	291, 942
BstDEI	CTNAG	5 cut(s)	484, 733, 897, 902, 909
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	286, 507, 933
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	3 cut(s)	196, 777, 965
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 266, 584
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	2 cut(s)	258, 561
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	946
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	662, 812
BstV2I	GAAGAC	2 cut(s)	44, 238
BsuRI	GGCC	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	3 cut(s)	286, 507, 933
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	2 cut(s)	291, 942
Csp6I	GTAC	3 cut(s)	151, 361, 811
CviQI	GTAC	3 cut(s)	151, 361, 811
DdeI	CTNAG	5 cut(s)	484, 733, 897, 902, 909
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraI	TTTAAA	2 cut(s)	367, 817
DraIII	CACNNNGTG	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco130I	CCWWGG	2 cut(s)	654, 1014
Eco31I	GGTCTC	1 cut(s)	965
Eco32I	GATATC	1 cut(s)	447
Eco57I	CTGAAG	4 cut(s)	56, 225, 232, 531
Eco88I	CYCGRG	1 cut(s)	110
EcoRI	GAATTC	2 cut(s)	624, 768
EcoRII	CCWGG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	2 cut(s)	654, 1014
ErhI	CCWWGG	2 cut(s)	654, 1014
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	1 cut(s)	899
Fnu4HI	GCNGC	2 cut(s)	651, 801
FokI	GGATG	3 cut(s)	293, 514, 940
Fsp4HI	GCNGC	2 cut(s)	651, 801
FspBI	CTAG	1 cut(s)	956
GluI	GCNGC	2 cut(s)	651, 801
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	2 cut(s)	296, 842
HaeIII	GGCC	1 cut(s)	523
HincII	GTYRAC	2 cut(s)	461, 661
HindII	GTYRAC	2 cut(s)	461, 661
HindIII	AAGCTT	2 cut(s)	118, 899
HinfI	GANTC	3 cut(s)	184, 920, 1061
HphI	GGTGA	1 cut(s)	1004
Hpy166II	GTNNAC	2 cut(s)	461, 661
Hpy188I	TCNGA	4 cut(s)	36, 385, 444, 966
Hpy188III	TCNNGA	3 cut(s)	112, 275, 476
Hpy8I	GTNNAC	2 cut(s)	461, 661
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	299, 1011
HpyCH4IV	ACGT	2 cut(s)	153, 673
HpyCH4V	TGCA	7 cut(s)	62, 137, 146, 545, 557, 650, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 266, 584
HpyF3I	CTNAG	5 cut(s)	484, 733, 897, 902, 909
HpySE526I	ACGT	2 cut(s)	153, 673
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	727, 823, 937
Lsp1109I	GCAGC	2 cut(s)	662, 812
MaeI	CTAG	1 cut(s)	956
MaeII	ACGT	2 cut(s)	153, 673
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	6 cut(s)	49, 182, 238, 480, 594, 701
MhlI	GDGCHC	2 cut(s)	349, 732
MluCI	AATT	7 cut(s)	44, 141, 318, 624, 701, 768, 1037
MnlI	CCTC	9 cut(s)	271, 359, 472, 563, 577, 629, 675, 952, 960
MseI	TTAA	3 cut(s)	366, 816, 987
MslI	CAYNNNNRTG	2 cut(s)	171, 356
MspCI	CTTAAG	1 cut(s)	986
MspR9I	CCNGG	1 cut(s)	433
Mva1269I	GAATGC	3 cut(s)	139, 427, 838
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	3 cut(s)	143, 266, 584
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	825, 939
NspI	RCATGY	2 cut(s)	258, 561
PaeR7I	CTCGAG	1 cut(s)	110
PctI	GAATGC	3 cut(s)	139, 427, 838
PfeI	GAWTC	3 cut(s)	184, 920, 1061
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	652, 802
Psp6I	CCWGG	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	825, 939
RsaI	GTAC	3 cut(s)	152, 362, 812
RsaNI	GTAC	3 cut(s)	151, 361, 811
RseI	CAYNNNNRTG	2 cut(s)	171, 356
SaqAI	TTAA	3 cut(s)	366, 816, 987
SatI	GCNGC	2 cut(s)	651, 801
Sau3AI	GATC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	812
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	2 cut(s)	349, 732
SfcI	CTRYAG	1 cut(s)	946
Sfr274I	CTCGAG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	171, 356
SmlI	CTYRAG	2 cut(s)	110, 986
SmoI	CTYRAG	2 cut(s)	110, 986
Sse9I	AATT	7 cut(s)	44, 141, 318, 624, 701, 768, 1037
SspMI	CTAG	1 cut(s)	956
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	654, 1014
TaaI	ACNGT	2 cut(s)	299, 1011
TaiI	ACGT	2 cut(s)	156, 676
TaqI	TCGA	1 cut(s)	111
TasI	AATT	7 cut(s)	44, 141, 318, 624, 701, 768, 1037
TatI	WGTACW	2 cut(s)	360, 810
TfiI	GAWTC	3 cut(s)	184, 920, 1061
Tru1I	TTAA	3 cut(s)	366, 816, 987
Tru9I	TTAA	3 cut(s)	366, 816, 987
TscAI	CASTG	1 cut(s)	741
TseI	GCWGC	2 cut(s)	650, 800
TspDTI	ATGAA	8 cut(s)	42, 117, 183, 485, 518, 714, 725, 761
TspRI	CASTG	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	432
Vha464I	CTTAAG	1 cut(s)	986
XapI	RAATTY	3 cut(s)	624, 701, 768
XceI	RCATGY	2 cut(s)	258, 561
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	1 cut(s)	956
ZrmI	AGTACT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.