Prupe.4G011600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0019206
Physical Location & Seq
Reverse (-)
560209 .. 560892
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G011600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 684 bp
ATGGGAGCTAATCTGAGCACATTCAAGCGCTCATCATCATCATCAGCTGCTACACAGAGACCGCAGCAGGCAGGAGGAGGTGATGGTAATTCAAGTCCAGCTGGACCGTCCTGTATGGAGTTGCTGAAACCAGAGTGCTTAAAAGTGAAAGCAGAGAAGAAGAAAAGGAAGAGACCATTGACCCCAGAGAGGAACAAGATTCAAAATAATAATAATAATAATTATAATAATAATAATAATAATACTGGAGGAGGAGGAGGAGCATCTGGGAGTGGGACCAGGTTGACCACACTCGAAGAATGGCTCTTAGCTTCTCCTGGCCATCGTGGCATGAAGAAGCCAGATAATTACAATATCACTGGAGGTGAATTGTATGTGTTTAGACCCCATTCTAGAAGGGTGCACCCTGCATCTTCTTCTTCATCTAAATTACCAGCTGATCATGTTCCTACGGCAGCAGCGCCTTTAGACTCTAAAGCAAGAGACAGCATCTGTCTGGAGAGATTCGTCAAGAACGATCAGATTAATGATAAGATGAAAAAGAAGGTAAGCTTTAGACTGCCTGAAGAAGCTGATATTATCATATTTTACCCCTCAGAGGAGATCATGGCAGTGACAGACAGTGATAGTGATGATGAAGACTATGATATAAGAACATCTACCAGCCAAGATGTCAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.76

Weight (kDa)

9.05

Isoelectric Point (pI)

66.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01051
prunus_persica Prupe.4G011600_v2.0.a1
rosa_laevigata RLG00000030946
rosa_roxburghii Rroxscaffold_1G00074720
rosa_samantha Rh5AG012700 Rh5BG015600 Rh5CG013700 Rh5DG013500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AciI CCGC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 585
AfeI AGCGCT 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 189, 598
AgsI TTSAA 3 cut(s) 25, 93, 203
AjnI CCWGG 2 cut(s) 278, 316
AluBI AGCT 7 cut(s) 8, 47, 101, 311, 437, 552, 572
AluI AGCT 7 cut(s) 8, 47, 101, 311, 437, 552, 572
Alw21I GWGCWC 2 cut(s) 20, 405
Alw26I GTCTC 3 cut(s) 52, 166, 477
Alw44I GTGCAC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 492
Aor51HI AGCGCT 1 cut(s) 29
AoxI GGCC 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 4 cut(s) 47, 64, 455, 458
AseI ATTAAT 1 cut(s) 525
AspLEI GCGC 2 cut(s) 30, 463
AspS9I GGNCC 2 cut(s) 104, 276
AsuHPI GGTGA 2 cut(s) 92, 377
AvaII GGWCC 2 cut(s) 104, 276
BaeGI GKGCMC 1 cut(s) 405
BalI TGGCCA 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 20, 405
BbvI GCAGC 4 cut(s) 34, 76, 467, 470
BccI CCATC 2 cut(s) 77, 330
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 2 cut(s) 280, 318
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 52, 166, 477
BfaI CTAG 1 cut(s) 393
BfoI RGCGCY 2 cut(s) 31, 464
BglI GCCNNNNNGGC 1 cut(s) 327
BisI GCNGC 4 cut(s) 48, 65, 456, 459
BlsI GCNGC 4 cut(s) 49, 66, 457, 460
Bme1390I CCNGG 2 cut(s) 280, 318
Bme18I GGWCC 2 cut(s) 104, 276
BmgT120I GGNCC 2 cut(s) 104, 276
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 280, 318
BmsI GCATC 3 cut(s) 272, 419, 498
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 3 cut(s) 267, 381, 518
BsaI GGTCTC 2 cut(s) 52, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 598
Bse1I ACTGG 2 cut(s) 250, 364
BseBI CCWGG 2 cut(s) 280, 318
BseLI CCNNNNNNNGG 2 cut(s) 189, 598
BseMII CTCAG 2 cut(s) 5, 609
BseNI ACTGG 2 cut(s) 250, 364
BseRI GAGGAG 6 cut(s) 90, 264, 267, 270, 273, 614
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 4 cut(s) 34, 76, 467, 470
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 20, 405
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 189, 598
BsmAI GTCTC 3 cut(s) 52, 166, 477
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 2 cut(s) 52, 166
Bsp1286I GDGCHC 2 cut(s) 20, 405
Bsp143I GATC 3 cut(s) 439, 517, 603
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 6, 608
BspLI GGNNCC 1 cut(s) 277
BspTNI GGTCTC 2 cut(s) 52, 166
BsrI ACTGG 2 cut(s) 250, 364
BssMI GATC 3 cut(s) 439, 517, 603
Bst2UI CCWGG 2 cut(s) 280, 318
Bst4CI ACNGT 2 cut(s) 108, 623
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 14, 307, 595, 681
BstH2I RGCGCY 2 cut(s) 31, 464
BstHHI GCGC 2 cut(s) 30, 463
BstKTI GATC 3 cut(s) 442, 520, 606
BstMAI GTCTC 3 cut(s) 52, 166, 477
BstMBI GATC 3 cut(s) 439, 517, 603
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 2 cut(s) 280, 318
BstSCI CCNGG 2 cut(s) 278, 316
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 34, 76, 467, 470
BstV2I GAAGAC 1 cut(s) 645
BsuRI GGCC 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 357, 618, 628
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 492
CfoI GCGC 2 cut(s) 30, 463
Cfr13I GGNCC 2 cut(s) 104, 276
CsiI ACCWGGT 1 cut(s) 278
CviAII CATG 3 cut(s) 331, 443, 607
DdeI CTNAG 4 cut(s) 14, 307, 595, 681
DpnI GATC 3 cut(s) 441, 519, 605
DpnII GATC 3 cut(s) 439, 517, 603
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco31I GGTCTC 2 cut(s) 52, 166
Eco47I GGWCC 2 cut(s) 104, 276
Eco47III AGCGCT 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 585
EcoRII CCWGG 2 cut(s) 278, 316
FaeI CATG 3 cut(s) 334, 446, 610
FaiI YATR 9 cut(s) 116, 225, 332, 375, 444, 584, 608, 645, 650
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 330, 442, 606
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 4 cut(s) 48, 65, 456, 459
Fsp4HI GCNGC 4 cut(s) 48, 65, 456, 459
FspBI CTAG 1 cut(s) 393
GlaI GCGC 2 cut(s) 29, 462
GluI GCNGC 4 cut(s) 48, 65, 456, 459
GsuI CTGGAG 3 cut(s) 267, 381, 518
HaeII RGCGCY 2 cut(s) 31, 464
HaeIII GGCC 1 cut(s) 321
HhaI GCGC 2 cut(s) 30, 463
Hin1II CATG 3 cut(s) 334, 446, 610
Hin6I GCGC 2 cut(s) 28, 461
HinP1I GCGC 2 cut(s) 28, 461
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 550
HinfI GANTC 3 cut(s) 199, 470, 504
HphI GGTGA 2 cut(s) 92, 377
Hpy166II GTNNAC 2 cut(s) 285, 403
Hpy188I TCNGA 3 cut(s) 15, 522, 598
Hpy188III TCNNGA 3 cut(s) 393, 497, 511
Hpy8I GTNNAC 2 cut(s) 285, 403
HpyAV CCTTC 2 cut(s) 390, 538
HpyCH4III ACNGT 2 cut(s) 108, 623
HpyCH4V TGCA 2 cut(s) 403, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 4 cut(s) 14, 307, 595, 681
Hsp92II CATG 3 cut(s) 334, 446, 610
HspAI GCGC 2 cut(s) 28, 461
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 439, 517, 603
LmnI GCTCC 2 cut(s) 5, 260
Lsp1109I GCAGC 4 cut(s) 34, 76, 467, 470
LweI GCATC 3 cut(s) 272, 419, 498
MabI ACCWGGT 1 cut(s) 278
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 613
MalI GATC 3 cut(s) 441, 519, 605
MboI GATC 3 cut(s) 439, 517, 603
MhlI GDGCHC 2 cut(s) 20, 405
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 5 cut(s) 88, 220, 346, 368, 428
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 464
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 2 cut(s) 140, 525
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 3 cut(s) 47, 101, 437
MspR9I CCNGG 2 cut(s) 280, 318
MvaI CCWGG 2 cut(s) 280, 318
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 3 cut(s) 439, 517, 603
NlaIII CATG 3 cut(s) 334, 446, 610
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 2 cut(s) 199, 504
PkrI GCNGC 4 cut(s) 49, 66, 457, 460
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 525
PsiI TTATAA 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 278, 316
PspGI CCWGG 2 cut(s) 278, 316
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 2 cut(s) 104, 276
PstNI CAGNNNCTG 1 cut(s) 492
PvuII CAGCTG 3 cut(s) 47, 101, 437
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 2 cut(s) 140, 525
SatI GCNGC 4 cut(s) 48, 65, 456, 459
Sau3AI GATC 3 cut(s) 439, 517, 603
Sau96I GGNCC 2 cut(s) 104, 276
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 280, 318
SduI GDGCHC 2 cut(s) 20, 405
SexAI ACCWGGT 1 cut(s) 278
SfaNI GCATC 3 cut(s) 272, 419, 498
SinI GGWCC 2 cut(s) 104, 276
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 5 cut(s) 88, 220, 346, 368, 428
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 278, 316
TaaI ACNGT 2 cut(s) 108, 623
TaqI TCGA 1 cut(s) 294
TasI AATT 5 cut(s) 88, 220, 346, 368, 428
TfiI GAWTC 2 cut(s) 199, 504
Tru1I TTAA 2 cut(s) 140, 525
Tru9I TTAA 2 cut(s) 140, 525
TscAI CASTG 3 cut(s) 364, 618, 628
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 4 cut(s) 47, 64, 455, 458
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 4 cut(s) 347, 411, 551, 651
TspRI CASTG 3 cut(s) 364, 618, 628
VneI GTGCAC 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 104, 276
VspI ATTAAT 1 cut(s) 525
XbaI TCTAGA 1 cut(s) 392
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.