Prupe.4G035300_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0019574
Physical Location & Seq
Forward (+)
1676744 .. 1677479
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G035300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 255 bp
ATGAGCTTGAGGGACGTGAGTAGAGTGGTGTACCAGGCAGGGATGAGGGTTATGCAGGGGGTCAAAGAGCAGGCTCCCAAGTGTGGTGGTTCATCATCTTCTTCTTCTTCTTCATCTTCCTCTTCAAAGCAGGCATGGCGTTTCTCTTCATCTGTCGATTCGGGTGCTTTCAAGGCTGCCAACAGTGACAAGGTTAAGCAAGCAGAGGAGTCTCTCAGGACTGTCATGTACTTGAGCTGTTGGGGTCCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

85

Amino Acids

8.99

Weight (kDa)

9.62

Isoelectric Point (pI)

70.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05070
fragaria_vesca FvH4_3g03810
prunus_persica Prupe.4G035300_v2.0.a1
rosa_multiflora Rmu_co8061632.1_g000001
rosa_roxburghii Rroxscaffold_1G00069890
rosa_rugosa Rorug04G0419500
rosa_samantha Rh5BG046000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 32, 230
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 2 cut(s) 126, 172
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 6, 237
AluI AGCT 2 cut(s) 6, 237
Alw26I GTCTC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 216
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 2 cut(s) 75, 246
BmrFI CCNGG 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 28, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 75, 246
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 185, 223
Bst6I CTCTTC 2 cut(s) 127, 151
BstC8I GCNNGC 3 cut(s) 72, 132, 201
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 136, 173
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 163
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 3 cut(s) 72, 132, 201
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 31, 229
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 2 cut(s) 135, 226
CviJI RGCY 4 cut(s) 6, 74, 176, 237
CviKI_1 RGCY 4 cut(s) 6, 74, 176, 237
CviQI GTAC 2 cut(s) 31, 229
DdeI CTNAG 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 127, 151
EarI CTCTTC 2 cut(s) 127, 151
Eco47I GGWCC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 138, 229
FaiI YATR 3 cut(s) 53, 136, 227
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 134, 225
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 138, 229
HinfI GANTC 2 cut(s) 158, 209
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 185, 223
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 173
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 138, 229
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 7 cut(s) 20, 24, 41, 47, 56, 116, 202
Lsp1109I GCAGC 1 cut(s) 163
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 8 cut(s) 90, 93, 96, 99, 102, 108, 114, 138
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 4 cut(s) 3, 39, 130, 199
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 136, 173
NlaIII CATG 2 cut(s) 138, 229
NlaIV GGNNCC 2 cut(s) 75, 246
NmuCI GTSAC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 75, 246
PspPI GGNCC 1 cut(s) 245
PspPPI RGGWCCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 32, 230
RsaNI GTAC 2 cut(s) 31, 229
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 35
SetI ASST 4 cut(s) 8, 18, 195, 239
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 7, 232
SmoI CTYRAG 2 cut(s) 7, 232
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 185, 223
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 156
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 81, 102, 138
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.