Prupe.4G040400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015167
Physical Location & Seq
Forward (+)
1898876 .. 1900158
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G040400.2

Sequence Viewer

Length: 303 bp
ATGAATATGGGTTTGGTAGGAAGCTTGGTTTGGGTGAATGCATACAGTAGGAAGCAGTGTAGGAGCCTGTTCTGGAGAATGAGAGCGGCATTGAAGAAGGCTCTCAAGAACTCTGGCAAGCAGCAGTTGAGGTTCCAATATGATCCTTCCAGCTATGCTCTGAATTTTGATGATGGCTCTTGGAAATCAGCCCAGGAAGCAAATGCTTTGAAATTGAAACATGCAACAAAACCTCAGGCCCATTCGGATTCAGATGTCAAAAATACTGCTTGGGTTTATGTTCTTTGGGTGGTTTCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.45

Weight (kDa)

9.89

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11112
fragaria_vesca FvH4_3g04560 FvH4_6g14200
malus_domestica MD05G1322400.v1.1
prunus_persica Prupe.4G040400_v2.0.a1 Prupe.4G040400_v2.0.a1
pyrus_communis pycom10g25310
rosa_chinensis RchiOBHm_Chr5g0007481
rosa_laevigata RLG00000031460
rosa_multiflora Rmu_ssc0000182.1_g000005
rosa_roxburghii Rroxscaffold_1G00068910
rosa_rugosa Rorug04G0427500
rosa_samantha Rh5AG055700 Rh5BG053200 Rh5CG063100 Rh5DG052200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 163
AgsI TTSAA 3 cut(s) 94, 211, 217
AjnI CCWGG 1 cut(s) 192
AjuI GAANNNNNNNTTGG 3 cut(s) 13, 28, 45
AluBI AGCT 2 cut(s) 24, 153
AluI AGCT 2 cut(s) 24, 153
AlwI GGATC 1 cut(s) 137
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 234
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 194
BisI GCNGC 2 cut(s) 87, 122
BlsI GCNGC 2 cut(s) 88, 123
Bme1390I CCNGG 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 65, 134
BmrFI CCNGG 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 65, 134
BspPI GGATC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 1 cut(s) 239
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 238
CviAII CATG 1 cut(s) 221
CviJI RGCY 7 cut(s) 24, 66, 101, 153, 177, 191, 239
CviKI_1 RGCY 7 cut(s) 24, 66, 101, 153, 177, 191, 239
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 43
FaeI CATG 1 cut(s) 224
FaiI YATR 6 cut(s) 8, 43, 141, 156, 222, 279
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 87, 122
Fsp4HI GCNGC 2 cut(s) 87, 122
GluI GCNGC 2 cut(s) 87, 122
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 1 cut(s) 239
Hin1II CATG 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 1 cut(s) 248
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 4 cut(s) 162, 247, 253, 298
Hpy188III TCNNGA 2 cut(s) 73, 106
HpyAV CCTTC 2 cut(s) 91, 156
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 41, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 7 cut(s) 58, 80, 99, 163, 179, 206, 221
Lsp1109I GCAGC 1 cut(s) 133
MalI GATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 86
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 106
MluCI AATT 2 cut(s) 163, 212
MnlI CCTC 2 cut(s) 123, 243
Mph1103I ATGCAT 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 65, 134
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 1 cut(s) 224
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 88, 123
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 65, 134
PspPI GGNCC 1 cut(s) 238
SatI GCNGC 2 cut(s) 87, 122
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 194
SetI ASST 4 cut(s) 26, 134, 155, 235
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 163, 212
SsiI CCGC 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 47
TasI AATT 2 cut(s) 163, 212
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 248
TscAI CASTG 1 cut(s) 62
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 62
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.