Prupe.4G102100_v2.0.a1

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017100
Physical Location & Seq
Reverse (-)
5215011 .. 5217792
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G102100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1179 bp
ATGAAACAGCCCCATCAACATTTCTTGGCTGTCCGGTTGAAAACAACCTCATCTCAGTATGTAGCATCAAGAGCCAGAGATCCCACGTTTGAGAAACTAATGGATAAGTACAAGAACCTTCTCAAAGTCATTGCTGTCCAAGATCTCATCCTAGCAAACCCCATCAACCCTGCAGTATCCCTTGATTTTCTCTCCAGGCTCTCTCAAAAGCTCCATCTCAACCGTGGTGCAGTCGCCTTCCTCCGCAAATACCCTCACATTTTCCACATTTACCATGATCCCATGAAGTCTCAGACCTTCTGCAGATTAACTGATGCTGCTATTCAAATTTCTAAAGAAGAAGCAGAGGTCATCAATGCCTCGTTGCCGCTTGTTGTTGATCGATTGGTTCGACTTCTATCAATGTCTCGTTCCAGGATGTTGCCACTCCGTGCCATTTTGAAAGTTGGCAGGGAACTTGGGCTTCCTGATGATTTTGAGGATTCTGTAATATCCAGAAACTCCCATCTTTTTCAACTTTGTGATGCTCATGAGCCCAATACTCACAACTTGAAACTGTTTGATGTAATTCCTGAAAAGTTTACTGCAGCGGTTGAGAACTGGAGGGTAGAGGAATTTTGCAAGGAGGGTTGCAATGTCGATAGGGCTGAAATTCAGTTTAGTTTTAAACATGGGTATCCTCCAGGGATGAGGTTAAGAAAGAATTTTAGGGCCAAGGTTAAGGAATGGCAGAGGTTGCCATATGTGGGACCATATGATGAGTTGTCTGAGAAGAAGAGGTCATCTAAGGCAGGAATGATGGCTGTGGAGAAACGGGCAGTTGCAACTGTTCATGAATTCTTGAATTTGACAGTAGAGAAGACAGTTGAAGTGGAAAAAATCAGCCATTTCAGGAAATGGTTTGGCTTTGATTTGAATATAAGGGATTTGTTCTTGGATCACCCTGGGATGTTTTATTTGTCGACCAAGGGAAAGAGACACACCGTTTTTCTGAGAGAAGCTTATGAGAGGGGGTGTTTGATTCACCCAAATCCAGTTTATCATGCAAGGAGAAAGCTTCTGGATCTTGTAGTTTTGGGACGTCATGGCTTGTTAACTGATGAGCTGAGGTCCATTGCTAGTAACAAGAAGGCTGAGTCACTGGGACAGTACGATGGAGAATCCTGTATCTCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

393

Amino Acids

45.28

Weight (kDa)

9.42

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06440
fragaria_vesca FvH4_3g11420 FvH4_3g11420 FvH4_3g11420
prunus_persica Prupe.4G102100_v2.0.a1
rosa_laevigata RLG00000032356
rosa_multiflora Rmu_sc0004464.1_g000003
rosa_rugosa Rorug05G0041900
rosa_samantha Rh5AG135200 Rh5BG133800 Rh5CG145600 Rh5DG135200
rosa_wichuraiana Rw5G011810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1084
AccI GTMKAC 1 cut(s) 962
AciI CCGC 3 cut(s) 244, 368, 590
AclWI GGATC 4 cut(s) 74, 272, 945, 1071
AcsI RAATTY 6 cut(s) 327, 614, 651, 703, 836, 844
AcyI GRCGYC 1 cut(s) 1081
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 110, 1151
AfiI CCNNNNNNNGG 1 cut(s) 746
AgsI TTSAA 8 cut(s) 40, 326, 442, 515, 553, 844, 869, 916
AjnI CCWGG 4 cut(s) 194, 413, 682, 943
AluBI AGCT 4 cut(s) 211, 1001, 1057, 1105
AluI AGCT 4 cut(s) 211, 1001, 1057, 1105
Alw26I GTCTC 3 cut(s) 294, 411, 970
AlwI GGATC 4 cut(s) 74, 272, 945, 1071
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 2 cut(s) 317, 587
ApoI RAATTY 6 cut(s) 327, 614, 651, 703, 836, 844
AspS9I GGNCC 3 cut(s) 711, 749, 1110
AsuHPI GGTGA 2 cut(s) 932, 1016
AvaII GGWCC 2 cut(s) 749, 1110
BaeI ACNNNNGTAYC 2 cut(s) 659, 692
BanII GRGCYC 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 866
BbvCI CCTCAGC 1 cut(s) 1106
BbvI GCAGC 2 cut(s) 304, 599
BccI CCATC 6 cut(s) 21, 170, 222, 513, 793, 1148
BciT130I CCWGG 4 cut(s) 196, 415, 684, 945
BciVI GTATCC 2 cut(s) 187, 687
BcoDI GTCTC 3 cut(s) 294, 411, 970
BfaI CTAG 2 cut(s) 152, 1119
BfmI CTRYAG 3 cut(s) 171, 301, 585
BfuI GTATCC 2 cut(s) 187, 687
BglII AGATCT 1 cut(s) 142
BisI GCNGC 3 cut(s) 318, 368, 588
BlsI GCNGC 3 cut(s) 319, 369, 589
Bme1390I CCNGG 4 cut(s) 196, 415, 684, 945
Bme18I GGWCC 2 cut(s) 749, 1110
BmgT120I GGNCC 3 cut(s) 711, 749, 1110
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 4 cut(s) 196, 415, 684, 945
BmrI ACTGGG 1 cut(s) 1151
BmsI GCATC 3 cut(s) 74, 304, 514
BmuI ACTGGG 1 cut(s) 1151
BpiI GAAGAC 1 cut(s) 866
BpmI CTGGAG 3 cut(s) 178, 622, 666
Bpu10I CCTNAGC 1 cut(s) 1106
Bsa29I ATCGAT 1 cut(s) 382
BsaHI GRCGYC 1 cut(s) 1081
BsaJI CCNNGG 6 cut(s) 223, 683, 714, 943, 944, 966
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse1I ACTGG 3 cut(s) 605, 1034, 1146
Bse3DI GCAATG 3 cut(s) 129, 640, 1113
BseBI CCWGG 4 cut(s) 196, 415, 684, 945
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 6 cut(s) 223, 683, 714, 943, 944, 966
BseGI GGATG 4 cut(s) 147, 423, 693, 954
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMI GCAATG 3 cut(s) 129, 640, 1113
BseMII CTCAG 6 cut(s) 68, 305, 759, 983, 1097, 1125
BseNI ACTGG 3 cut(s) 605, 1034, 1146
BseXI GCAGC 2 cut(s) 304, 599
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 382
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 3 cut(s) 762, 1092, 1158
BslI CCNNNNNNNGG 1 cut(s) 746
BsmAI GTCTC 3 cut(s) 294, 411, 970
BsmFI GGGAC 3 cut(s) 762, 1092, 1158
BsnI GGCC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
BspACI CCGC 3 cut(s) 244, 368, 590
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 6 cut(s) 67, 304, 760, 984, 1098, 1126
BspDI ATCGAT 1 cut(s) 382
BspHI TCATGA 2 cut(s) 529, 832
BspLI GGNNCC 1 cut(s) 750
BspMAI CTGCAG 3 cut(s) 175, 305, 589
BspPI GGATC 4 cut(s) 74, 272, 945, 1071
BsrDI GCAATG 3 cut(s) 129, 640, 1113
BsrI ACTGG 3 cut(s) 605, 1034, 1146
BssECI CCNNGG 6 cut(s) 223, 683, 714, 943, 944, 966
BssMI GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
BssNI GRCGYC 1 cut(s) 1081
BssT1I CCWWGG 2 cut(s) 714, 966
Bst2UI CCWGG 4 cut(s) 196, 415, 684, 945
Bst4CI ACNGT 7 cut(s) 224, 558, 829, 853, 865, 985, 1149
Bst6I CTCTTC 1 cut(s) 770
BstACI GRCGYC 1 cut(s) 1081
BstAPI GCANNNNNTGC 1 cut(s) 736
BstDEI CTNAG 7 cut(s) 54, 291, 768, 786, 992, 1106, 1134
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 4 cut(s) 147, 423, 693, 954
BstKTI GATC 6 cut(s) 82, 145, 280, 382, 940, 1066
BstMAI GTCTC 3 cut(s) 294, 411, 970
BstMBI GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
BstMWI GCNNNNNNNGC 2 cut(s) 71, 736
BstNI CCWGG 4 cut(s) 196, 415, 684, 945
BstSCI CCNGG 4 cut(s) 194, 413, 682, 943
BstSFI CTRYAG 3 cut(s) 171, 301, 585
BstV1I GCAGC 2 cut(s) 304, 599
BstV2I GAAGAC 1 cut(s) 866
BstX2I RGATCY 3 cut(s) 79, 142, 1063
BstYI RGATCY 3 cut(s) 79, 142, 1063
Bsu15I ATCGAT 1 cut(s) 382
BsuI GTATCC 2 cut(s) 187, 687
BsuRI GGCC 1 cut(s) 713
BsuTUI ATCGAT 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 4 cut(s) 147, 423, 693, 954
BtsIMutI CAGTG 1 cut(s) 1139
CciI TCATGA 2 cut(s) 529, 832
Cfr13I GGNCC 3 cut(s) 711, 749, 1110
ClaI ATCGAT 1 cut(s) 382
Csp6I GTAC 2 cut(s) 109, 1150
CviAII CATG 7 cut(s) 275, 283, 530, 671, 833, 1043, 1085
CviQI GTAC 2 cut(s) 109, 1150
DdeI CTNAG 7 cut(s) 54, 291, 768, 786, 992, 1106, 1134
DpnI GATC 6 cut(s) 81, 144, 279, 381, 939, 1065
DpnII GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
DraI TTTAAA 1 cut(s) 667
DraIII CACNNNGTG 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 770
EarI CTCTTC 1 cut(s) 770
Eco130I CCWWGG 2 cut(s) 714, 966
Eco24I GRGCYC 1 cut(s) 537
Eco47I GGWCC 2 cut(s) 749, 1110
EcoRI GAATTC 1 cut(s) 836
EcoRII CCWGG 4 cut(s) 194, 413, 682, 943
EcoT14I CCWWGG 2 cut(s) 714, 966
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 2 cut(s) 714, 966
FaeI CATG 7 cut(s) 278, 286, 533, 674, 836, 1046, 1088
FaqI GGGAC 3 cut(s) 762, 1092, 1158
FatI CATG 7 cut(s) 274, 282, 529, 670, 832, 1042, 1084
FauNDI CATATG 2 cut(s) 742, 754
FblI GTMKAC 1 cut(s) 962
Fnu4HI GCNGC 3 cut(s) 318, 368, 588
FokI GGATG 4 cut(s) 134, 430, 700, 961
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 318, 368, 588
FspBI CTAG 2 cut(s) 152, 1119
GluI GCNGC 3 cut(s) 318, 368, 588
GsuI CTGGAG 3 cut(s) 178, 622, 666
HaeIII GGCC 1 cut(s) 713
HapII CCGG 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 1081
Hin1II CATG 7 cut(s) 278, 286, 533, 674, 836, 1046, 1088
HincII GTYRAC 2 cut(s) 963, 1095
HindII GTYRAC 2 cut(s) 963, 1095
HindIII AAGCTT 2 cut(s) 999, 1055
HinfI GANTC 4 cut(s) 482, 1021, 1136, 1160
HpaI GTTAAC 1 cut(s) 1095
HpaII CCGG 1 cut(s) 34
HphI GGTGA 2 cut(s) 932, 1016
Hpy166II GTNNAC 3 cut(s) 582, 963, 1095
Hpy188I TCNGA 4 cut(s) 294, 769, 993, 1174
Hpy188III TCNNGA 9 cut(s) 69, 467, 495, 530, 572, 833, 841, 892, 1061
Hpy8I GTNNAC 3 cut(s) 582, 963, 1095
HpyAV CCTTC 4 cut(s) 128, 247, 307, 1123
HpyCH4III ACNGT 7 cut(s) 224, 558, 829, 853, 865, 985, 1149
HpyCH4IV ACGT 2 cut(s) 86, 1081
HpyCH4V TGCA 8 cut(s) 173, 230, 303, 587, 621, 633, 824, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 736
HpyF3I CTNAG 7 cut(s) 54, 291, 768, 786, 992, 1106, 1134
HpySE526I ACGT 2 cut(s) 86, 1081
Hsp92I GRCGYC 1 cut(s) 1081
Hsp92II CATG 7 cut(s) 278, 286, 533, 674, 836, 1046, 1088
KspAI GTTAAC 1 cut(s) 1095
Kzo9I GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
LmnI GCTCC 1 cut(s) 216
Lsp1109I GCAGC 2 cut(s) 304, 599
LweI GCATC 3 cut(s) 74, 304, 514
MaeI CTAG 2 cut(s) 152, 1119
MaeII ACGT 2 cut(s) 86, 1081
MaeIII GTNAC 2 cut(s) 1121, 1137
MalI GATC 6 cut(s) 81, 144, 279, 381, 939, 1065
MboI GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
MboII GAAGA 4 cut(s) 350, 784, 787, 871
MflI RGATCY 3 cut(s) 79, 142, 1063
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 7 cut(s) 327, 567, 614, 651, 703, 836, 844
MlyI GAGTC 1 cut(s) 1145
MseI TTAA 6 cut(s) 308, 666, 695, 720, 1094, 1177
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 4 cut(s) 196, 415, 684, 945
MvaI CCWGG 4 cut(s) 196, 415, 684, 945
MwoI GCNNNNNNNGC 2 cut(s) 71, 736
NdeI CATATG 2 cut(s) 742, 754
NdeII GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
NlaIII CATG 7 cut(s) 278, 286, 533, 674, 836, 1046, 1088
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 1 cut(s) 1137
PagI TCATGA 2 cut(s) 529, 832
PasI CCCWGGG 1 cut(s) 944
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PfeI GAWTC 3 cut(s) 482, 1021, 1160
PfoI TCCNGGA 1 cut(s) 413
PkrI GCNGC 3 cut(s) 319, 369, 589
PleI GAGTC 1 cut(s) 1144
PpsI GAGTC 1 cut(s) 1144
Psp6I CCWGG 4 cut(s) 194, 413, 682, 943
PspGI CCWGG 4 cut(s) 194, 413, 682, 943
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 3 cut(s) 711, 749, 1110
PstI CTGCAG 3 cut(s) 175, 305, 589
PsuI RGATCY 3 cut(s) 79, 142, 1063
RsaI GTAC 2 cut(s) 110, 1151
RsaNI GTAC 2 cut(s) 109, 1150
SalI GTCGAC 1 cut(s) 961
SaqAI TTAA 6 cut(s) 308, 666, 695, 720, 1094, 1177
SatI GCNGC 3 cut(s) 318, 368, 588
Sau3AI GATC 6 cut(s) 79, 142, 277, 379, 937, 1063
Sau96I GGNCC 3 cut(s) 711, 749, 1110
SchI GAGTC 1 cut(s) 1145
ScrFI CCNGG 4 cut(s) 196, 415, 684, 945
SduI GDGCHC 1 cut(s) 537
SfaNI GCATC 3 cut(s) 74, 304, 514
SfcI CTRYAG 3 cut(s) 171, 301, 585
SinI GGWCC 2 cut(s) 749, 1110
Sse9I AATT 7 cut(s) 327, 567, 614, 651, 703, 836, 844
SsiI CCGC 3 cut(s) 244, 368, 590
SspMI CTAG 2 cut(s) 152, 1119
StyD4I CCNGG 4 cut(s) 194, 413, 682, 943
StyI CCWWGG 2 cut(s) 714, 966
TaaI ACNGT 7 cut(s) 224, 558, 829, 853, 865, 985, 1149
TaiI ACGT 2 cut(s) 89, 1084
TaqI TCGA 4 cut(s) 382, 391, 639, 962
TasI AATT 7 cut(s) 327, 567, 614, 651, 703, 836, 844
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 3 cut(s) 482, 1021, 1160
Tru1I TTAA 6 cut(s) 308, 666, 695, 720, 1094, 1177
Tru9I TTAA 6 cut(s) 308, 666, 695, 720, 1094, 1177
TscAI CASTG 1 cut(s) 1146
TseFI GTSAC 1 cut(s) 1137
TseI GCWGC 2 cut(s) 317, 587
Tsp45I GTSAC 1 cut(s) 1137
TspDTI ATGAA 4 cut(s) 17, 299, 821, 849
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 1146
VpaK11BI GGWCC 2 cut(s) 749, 1110
XapI RAATTY 6 cut(s) 327, 614, 651, 703, 836, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 962
XspI CTAG 2 cut(s) 152, 1119
ZraI GACGTC 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.