Prupe.4G185200_v2.0.a1

Regulator of chromosome condensation (RCC1) repeat

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
10978451 .. 10982282
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G185200.1

Sequence Viewer

Length: 1482 bp
ATGGCGGCTGAAAGATATAGGCCGGTGTCAATAGAGGACTTGCCATCACAATTAGTTATAGAAATCTTGAGCTCGGGAAGGCTCAGTGCCATTGATCTTCTACATTTAGAGTTAACTTCTAGGACATTTGGAGGGAGTCATGGGTTGTACCCTCACAAGTTTGGGTCACTGGTGGACTATGCGGCGTATCAGCTATGTGTGTCCCATTCTGTTTATGGTAAAATGGAAAGGAATGCTCAGAGGGGGCTATTTGATCGGTGCGGTGGGAAATGGAAGCGGGTTTTGAGGTTCTTGCAATCGGTGGAGCAATCATCTGACATGGTCGAGACCTCAGCAGGCAATATGCAAATTACAACTGGAAGGTATCACACATTGCTAATCAGCAATTCATCATTATACTCATGTGGTTCCAGCTTGTGTGGTGTTCTTGGTAATGGTCCTGAGACTAAGCAATGTGTAACATTTACCCGGATTAATTTTCCATCTCCAGCACAAGTAGTCCAAGTGTCGGCCTCCCATAACCATGCTGCTTTTGTTATGCAATCTGGAGAGGTTTTCACATGTGGGGATAATTCATCATTTTGTTGTGGGCATAAAGATACAAACCGACCAATTTTTAGGCCTAGGCTTGTTGAGGCATTGAAGGGACTTCCTTGCAAGCAGGTTGCTACAGGGCTTAATTTTACCGTGTTCCTTACAAGACAAGGTCATGTTTATACATGTGGGGCCAACACACATGGCCAACTTGGTCAGGGAGACACCATAGATAGCCCGGCTCCAAAAATGATTGAACTTCCCGAGGGAATTGGCTACATAGTTCAGATTGCTGCTGGCCCGAGTTATGTTTTAGCTGTAGCTGACAATGGAGTAGTCTACTCTTTTGGGTCGGGTTCTCACTTCTGTCTTGGCCATGGAGAGCAACATGATGAGTTCCAGCCACGCGCAATCCAAACATTTAAAAGAAAGGGTATTCATGTGGTTCGTGTCTCTGCAGGTGACGAGCATGCTGTGGCACTTGATTCCAGTGGATATGTATATACTTGGGGTAAAGGCTACTGTGGTGCATTAGGCCATGGGGATGAGATTGACAAGACTACCCCAGAACTCTTGAACAAGCTTAAAAGCCACCTCGCTGTACAGGTGTGTGCTAGAAAGCGGAAGACCTTTGTTCTCGGTGACAATGGTTCAGTATATGGTTGTGGTTGGATGGGGTTTGGCAGCCTTGGATTTCCAGACAGGGGAGTATCTGATAAAATCTTGAGCCCTAGAATCCTTGATAGCTTAAGAGCTCATCATGTTTCTCAGATTAGCACTGGGCTGTACCATACTGTTGTTGTCACTAACCGTGGAAAACTCTTTGGATTCGGAGATAATGAAAGGGCGCAACTCGGGCACGACACTTTAAGAGGATGCCTTGAACCAACTGAAATATTTATACAAGAAATGGCTGATGACGTGGATATTGTTCCAGAATGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

53.6

Weight (kDa)

7.05

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 983
Acc36I ACCTGC 2 cut(s) 652, 983
AccI GTMKAC 1 cut(s) 873
AccII CGCG 1 cut(s) 942
AciI CCGC 5 cut(s) 5, 182, 261, 277, 1156
AcoI YGGCCR 2 cut(s) 739, 907
AfaI GTAC 3 cut(s) 149, 1137, 1322
AfiI CCNNNNNNNGG 2 cut(s) 508, 1238
AflII CTTAAG 1 cut(s) 1282
AflIII ACRYGT 2 cut(s) 560, 719
AgsI TTSAA 4 cut(s) 643, 791, 1111, 1418
AjiI CACGTC 1 cut(s) 1456
AluBI AGCT 8 cut(s) 72, 193, 414, 851, 857, 1117, 1281, 1289
AluI AGCT 8 cut(s) 72, 193, 414, 851, 857, 1117, 1281, 1289
Alw21I GWGCWC 2 cut(s) 74, 1291
Alw26I GTCTC 4 cut(s) 320, 437, 750, 991
Ama87I CYCGRG 4 cut(s) 73, 797, 835, 1388
AoxI GGCC 8 cut(s) 20, 510, 620, 726, 739, 832, 907, 1069
ApeKI GCWGC 3 cut(s) 527, 827, 1218
AseI ATTAAT 1 cut(s) 474
AspA2I CCTAGG 1 cut(s) 623
AspLEI GCGC 2 cut(s) 944, 1384
AspS9I GGNCC 3 cut(s) 437, 726, 833
AsuC2I CCSGG 2 cut(s) 469, 773
AsuHPI GGTGA 2 cut(s) 1007, 1187
AvaI CYCGRG 4 cut(s) 73, 797, 835, 1388
AvaII GGWCC 1 cut(s) 437
AvrII CCTAGG 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 1395
BalI TGGCCA 2 cut(s) 741, 909
BanII GRGCYC 3 cut(s) 74, 1265, 1291
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 2 cut(s) 74, 1291
BbvCI CCTCAGC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 514, 814, 1230
BccI CCATC 3 cut(s) 52, 490, 1201
BcnI CCSGG 2 cut(s) 469, 773
BcoDI GTCTC 4 cut(s) 320, 437, 750, 991
BfaI CTAG 4 cut(s) 120, 624, 1149, 1266
BfmI CTRYAG 3 cut(s) 669, 852, 990
BfrI CTTAAG 1 cut(s) 1282
BfuAI ACCTGC 2 cut(s) 652, 983
BisI GCNGC 5 cut(s) 6, 183, 528, 828, 1219
BlnI CCTAGG 1 cut(s) 623
BlsI GCNGC 5 cut(s) 7, 184, 529, 829, 1220
Bme1390I CCNGG 2 cut(s) 469, 773
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 4 cut(s) 73, 797, 835, 1388
BmgBI CACGTC 1 cut(s) 1456
BmgT120I GGNCC 3 cut(s) 437, 726, 833
BmiI GGNNCC 3 cut(s) 409, 727, 777
BmrFI CCNGG 2 cut(s) 469, 773
BmrI ACTGGG 1 cut(s) 1323
BmsI GCATC 1 cut(s) 1400
BmuI ACTGGG 1 cut(s) 1323
BpiI GAAGAC 1 cut(s) 1166
BpmI CTGGAG 2 cut(s) 471, 567
Bpu10I CCTNAGC 1 cut(s) 331
BpuEI CTTGAG 2 cut(s) 88, 1279
BpuMI CCSGG 2 cut(s) 469, 773
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 6 cut(s) 623, 798, 910, 1072, 1222, 1345
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 1238
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 4 cut(s) 174, 361, 1023, 1318
Bse3DI GCAATG 2 cut(s) 371, 458
BseDI CCNNGG 6 cut(s) 623, 798, 910, 1072, 1222, 1345
BseGI GGATG 3 cut(s) 1084, 1212, 1415
BseLI CCNNNNNNNGG 2 cut(s) 508, 1238
BseMI GCAATG 2 cut(s) 371, 458
BseMII CTCAG 5 cut(s) 97, 251, 345, 432, 1316
BseNI ACTGG 4 cut(s) 174, 361, 1023, 1318
BseSI GKGCMC 1 cut(s) 1395
BseXI GCAGC 3 cut(s) 514, 814, 1230
Bsh1236I CGCG 1 cut(s) 942
BshFI GGCC 8 cut(s) 22, 512, 622, 728, 741, 834, 909, 1071
BsiHKAI GWGCWC 2 cut(s) 74, 1291
BsiHKCI CYCGRG 4 cut(s) 73, 797, 835, 1388
BsiSI CCGG 3 cut(s) 23, 469, 773
BslFI GGGAC 2 cut(s) 187, 660
BslI CCNNNNNNNGG 2 cut(s) 508, 1238
BsmAI GTCTC 4 cut(s) 320, 437, 750, 991
BsmFI GGGAC 2 cut(s) 187, 660
BsmI GAATGC 2 cut(s) 238, 1478
BsnI GGCC 8 cut(s) 22, 512, 622, 728, 741, 834, 909, 1071
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 4 cut(s) 73, 797, 835, 1388
Bsp1286I GDGCHC 4 cut(s) 74, 1265, 1291, 1395
Bsp1407I TGTACA 1 cut(s) 1135
Bsp143I GATC 2 cut(s) 94, 253
Bsp19I CCATGG 2 cut(s) 910, 1072
BspACI CCGC 5 cut(s) 5, 182, 261, 277, 1156
BspANI GGCC 8 cut(s) 22, 512, 622, 728, 741, 834, 909, 1071
BspCNI CTCAG 5 cut(s) 96, 250, 344, 433, 1315
BspFNI CGCG 1 cut(s) 942
BspLI GGNNCC 3 cut(s) 409, 727, 777
BspMAI CTGCAG 1 cut(s) 994
BspMI ACCTGC 2 cut(s) 652, 983
BspTI CTTAAG 1 cut(s) 1282
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 371, 458
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 1135
BsrI ACTGG 4 cut(s) 174, 361, 1023, 1318
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 6 cut(s) 623, 798, 910, 1072, 1222, 1345
BssMI GATC 2 cut(s) 94, 253
BssT1I CCWWGG 4 cut(s) 623, 910, 1072, 1222
Bst4CI ACNGT 4 cut(s) 688, 1058, 1330, 1346
BstAFI CTTAAG 1 cut(s) 1282
BstAUI TGTACA 1 cut(s) 1135
BstC8I GCNNGC 4 cut(s) 337, 659, 832, 1005
BstDEI CTNAG 6 cut(s) 83, 237, 331, 441, 447, 1302
BstDSI CCRYGG 3 cut(s) 910, 1072, 1345
BstF5I GGATG 3 cut(s) 1084, 1212, 1415
BstFNI CGCG 1 cut(s) 942
BstHHI GCGC 2 cut(s) 944, 1384
BstKTI GATC 2 cut(s) 97, 256
BstMAI GTCTC 4 cut(s) 320, 437, 750, 991
BstMBI GATC 2 cut(s) 94, 253
BstMWI GCNNNNNNNGC 1 cut(s) 1390
BstNSI RCATGY 3 cut(s) 564, 723, 1007
BstSCI CCNGG 2 cut(s) 467, 771
BstSFI CTRYAG 3 cut(s) 669, 852, 990
BstSLI GKGCMC 1 cut(s) 1395
BstUI CGCG 1 cut(s) 942
BstV1I GCAGC 3 cut(s) 514, 814, 1230
BstV2I GAAGAC 1 cut(s) 1166
BsuRI GGCC 8 cut(s) 22, 512, 622, 728, 741, 834, 909, 1071
BtgI CCRYGG 3 cut(s) 910, 1072, 1345
BtrI CACGTC 1 cut(s) 1456
BtsCI GGATG 3 cut(s) 1084, 1212, 1415
BtsIMutI CAGTG 4 cut(s) 91, 167, 1030, 1311
BveI ACCTGC 2 cut(s) 652, 983
Cac8I GCNNGC 4 cut(s) 337, 659, 832, 1005
CfoI GCGC 2 cut(s) 944, 1384
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 437, 726, 833
CseI GACGC 1 cut(s) 1465
Csp6I GTAC 3 cut(s) 148, 1136, 1321
CviQI GTAC 3 cut(s) 148, 1136, 1321
DdeI CTNAG 6 cut(s) 83, 237, 331, 441, 447, 1302
DpnI GATC 2 cut(s) 96, 255
DpnII GATC 2 cut(s) 94, 253
DraI TTTAAA 1 cut(s) 958
EaeI YGGCCR 2 cut(s) 739, 907
Ecl136II GAGCTC 2 cut(s) 72, 1289
Eco130I CCWWGG 4 cut(s) 623, 910, 1072, 1222
Eco147I AGGCCT 1 cut(s) 622
Eco24I GRGCYC 3 cut(s) 74, 1265, 1291
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 2 cut(s) 72, 1289
Eco88I CYCGRG 4 cut(s) 73, 797, 835, 1388
EcoICRI GAGCTC 2 cut(s) 72, 1289
EcoT14I CCWWGG 4 cut(s) 623, 910, 1072, 1222
EcoT38I GRGCYC 3 cut(s) 74, 1265, 1291
ErhI CCWWGG 4 cut(s) 623, 910, 1072, 1222
FaqI GGGAC 2 cut(s) 187, 660
FauI CCCGC 1 cut(s) 270
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 5 cut(s) 6, 183, 528, 828, 1219
FokI GGATG 3 cut(s) 1091, 1219, 1422
FriOI GRGCYC 3 cut(s) 74, 1265, 1291
Fsp4HI GCNGC 5 cut(s) 6, 183, 528, 828, 1219
FspBI CTAG 4 cut(s) 120, 624, 1149, 1266
GlaI GCGC 2 cut(s) 943, 1383
GluI GCNGC 5 cut(s) 6, 183, 528, 828, 1219
GsuI CTGGAG 2 cut(s) 471, 567
HaeIII GGCC 8 cut(s) 22, 512, 622, 728, 741, 834, 909, 1071
HapII CCGG 3 cut(s) 23, 469, 773
HgaI GACGC 1 cut(s) 1465
HhaI GCGC 2 cut(s) 944, 1384
Hin6I GCGC 2 cut(s) 942, 1382
HinP1I GCGC 2 cut(s) 942, 1382
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 4 cut(s) 136, 1019, 1269, 1362
HpaI GTTAAC 1 cut(s) 114
HpaII CCGG 3 cut(s) 23, 469, 773
HphI GGTGA 2 cut(s) 1007, 1187
Hpy166II GTNNAC 3 cut(s) 114, 175, 874
Hpy188I TCNGA 7 cut(s) 240, 316, 822, 1249, 1305, 1367, 1481
Hpy8I GTNNAC 3 cut(s) 114, 175, 874
HpyAV CCTTC 3 cut(s) 72, 354, 637
HpyCH4III ACNGT 4 cut(s) 688, 1058, 1330, 1346
HpyCH4IV ACGT 1 cut(s) 1455
HpyCH4V TGCA 6 cut(s) 295, 346, 541, 657, 992, 1064
HpyF10VI GCNNNNNNNGC 1 cut(s) 1390
HpyF3I CTNAG 6 cut(s) 83, 237, 331, 441, 447, 1302
HpySE526I ACGT 1 cut(s) 1455
HspAI GCGC 2 cut(s) 942, 1382
KspAI GTTAAC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 94, 253
LmnI GCTCC 2 cut(s) 304, 781
Lsp1109I GCAGC 3 cut(s) 514, 814, 1230
LweI GCATC 1 cut(s) 1400
MaeI CTAG 4 cut(s) 120, 624, 1149, 1266
MaeII ACGT 1 cut(s) 1455
MaeIII GTNAC 5 cut(s) 165, 457, 995, 1175, 1336
MalI GATC 2 cut(s) 96, 255
MboI GATC 2 cut(s) 94, 253
MboII GAAGA 2 cut(s) 89, 1171
MhlI GDGCHC 4 cut(s) 74, 1265, 1291, 1395
MlsI TGGCCA 2 cut(s) 741, 909
MluCI AATT 8 cut(s) 50, 348, 385, 475, 571, 612, 679, 804
MluNI TGGCCA 2 cut(s) 741, 909
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 1184
Mox20I TGGCCA 2 cut(s) 741, 909
MscI TGGCCA 2 cut(s) 741, 909
MseI TTAA 7 cut(s) 113, 474, 678, 957, 1119, 1283, 1403
MslI CAYNNNNRTG 2 cut(s) 522, 1077
Msp20I TGGCCA 2 cut(s) 741, 909
MspCI CTTAAG 1 cut(s) 1282
MspI CCGG 3 cut(s) 23, 469, 773
MspR9I CCNGG 2 cut(s) 469, 773
Mva1269I GAATGC 2 cut(s) 238, 1478
MvnI CGCG 1 cut(s) 942
MwoI GCNNNNNNNGC 1 cut(s) 1390
NciI CCSGG 2 cut(s) 469, 773
NcoI CCATGG 2 cut(s) 910, 1072
NdeII GATC 2 cut(s) 94, 253
NlaIV GGNNCC 3 cut(s) 409, 727, 777
NmuCI GTSAC 4 cut(s) 165, 995, 1175, 1336
NspI RCATGY 3 cut(s) 564, 723, 1007
PaeI GCATGC 1 cut(s) 1007
PaqCI CACCTGC 1 cut(s) 983
PceI AGGCCT 1 cut(s) 622
PciI ACATGT 2 cut(s) 560, 719
PctI GAATGC 2 cut(s) 238, 1478
PfeI GAWTC 3 cut(s) 1019, 1269, 1362
PflFI GACNNNGTC 2 cut(s) 320, 705
PkrI GCNGC 5 cut(s) 7, 184, 529, 829, 1220
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PscI ACATGT 2 cut(s) 560, 719
PshBI ATTAAT 1 cut(s) 474
Psp124BI GAGCTC 2 cut(s) 74, 1291
PspN4I GGNNCC 3 cut(s) 409, 727, 777
PspPI GGNCC 3 cut(s) 437, 726, 833
PstI CTGCAG 1 cut(s) 994
PsyI GACNNNGTC 2 cut(s) 320, 705
RsaI GTAC 3 cut(s) 149, 1137, 1322
RsaNI GTAC 3 cut(s) 148, 1136, 1321
RseI CAYNNNNRTG 2 cut(s) 522, 1077
SacI GAGCTC 2 cut(s) 74, 1291
SaqAI TTAA 7 cut(s) 113, 474, 678, 957, 1119, 1283, 1403
SatI GCNGC 5 cut(s) 6, 183, 528, 828, 1219
Sau3AI GATC 2 cut(s) 94, 253
Sau96I GGNCC 3 cut(s) 437, 726, 833
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 469, 773
SduI GDGCHC 4 cut(s) 74, 1265, 1291, 1395
SfaNI GCATC 1 cut(s) 1400
SfcI CTRYAG 3 cut(s) 669, 852, 990
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 522, 1077
SmlI CTYRAG 3 cut(s) 67, 1258, 1282
SmoI CTYRAG 3 cut(s) 67, 1258, 1282
SphI GCATGC 1 cut(s) 1007
Sse9I AATT 8 cut(s) 50, 348, 385, 475, 571, 612, 679, 804
SseBI AGGCCT 1 cut(s) 622
SsiI CCGC 5 cut(s) 5, 182, 261, 277, 1156
SspI AATATT 1 cut(s) 1431
SspMI CTAG 4 cut(s) 120, 624, 1149, 1266
SstI GAGCTC 2 cut(s) 74, 1291
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 467, 771
StyI CCWWGG 4 cut(s) 623, 910, 1072, 1222
TaaI ACNGT 4 cut(s) 688, 1058, 1330, 1346
TaiI ACGT 1 cut(s) 1458
TaqI TCGA 1 cut(s) 324
TasI AATT 8 cut(s) 50, 348, 385, 475, 571, 612, 679, 804
TatI WGTACW 1 cut(s) 1135
TauI GCSGC 2 cut(s) 8, 185
TfiI GAWTC 3 cut(s) 1019, 1269, 1362
Tru1I TTAA 7 cut(s) 113, 474, 678, 957, 1119, 1283, 1403
Tru9I TTAA 7 cut(s) 113, 474, 678, 957, 1119, 1283, 1403
TscAI CASTG 4 cut(s) 91, 174, 1030, 1318
TseFI GTSAC 4 cut(s) 165, 995, 1175, 1336
TseI GCWGC 3 cut(s) 527, 827, 1218
Tsp45I GTSAC 4 cut(s) 165, 995, 1175, 1336
TspDTI ATGAA 4 cut(s) 378, 564, 962, 1389
TspRI CASTG 4 cut(s) 91, 174, 1030, 1318
Tth111I GACNNNGTC 2 cut(s) 320, 705
Vha464I CTTAAG 1 cut(s) 1282
VpaK11BI GGWCC 1 cut(s) 437
VspI ATTAAT 1 cut(s) 474
XceI RCATGY 3 cut(s) 564, 723, 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 4 cut(s) 120, 624, 1149, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.