Rh6BG242800

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008686
Physical Location & Seq
Forward (+)
45243238 .. 45247059
3822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG242800.1

Sequence Viewer

Length: 1479 bp
ATGGCGGGGTACAGGCCTATTTCAATTGAGGACTTGCCGACACATTTGGTTTTAGAAATCTTGTGCTCCGGGAGGCTCAGTGCCGTTGATCTTTTGCATTTAGAGTCGACTTCTAGGACATTCGGAGGGAGTCAGGGGTTGTATCCTCACAAGTTTCGGTCATTGGTAGATTATGCGGCGTTTCAGCTGTGCATTTCCCATTCTGTATATGCTAAAATGGAAGAGAATGCTCAGACAGTGCTGTTTGAGCGGTGCGGTGGCAAGTGGAAGAGGATTTTGAGGTTCTTGCAATCCGTGGAGCAATCGTCTGACATGGTGGAGACTTCAGCAGGCAATCAGATGCATATTACCACTGGAAGGTATCACACTCTGCTAATAAGCAATTCATCAGTCTACTCGTGTGGTTCCAGCTTATGTGGTGTTCTTGGCCAAGGCCCTGAGACTAAACTATGTGTGACATTTACCCGGATTAGTTTTCCATCTCCAGCACATGTGGTCCAAGTCTCAGCCTCCCACAACCATGCTGCTTTTGTTATGCAATCTGGAGAGGTTTTCACATGTGGGGACAATTCGTCATTTTGTTGTGGGCATAAAGATACAAACCGGCCAATATTTAGGCCTAGGCTCGTAGAGGCAATGAAGGGAATTCCTTGCAAGCAGGTTGTTGCAGGGCTTAATTTTACAGCTTTCCTTACAAGACAAGGCCATGTTTATACATGTGGGGCCAATACACATGGACAACTCGGTCATGGAGACACCACAGATAGCCCAACTCCCAAAATTATTGAATTTCTCAAGCAAATTGGCTCCATAATTCAGATTGCTGCTGGTCCAAGTTACGTCTTAGCTGTAACTGACAACGGAGTAGTCTACTCTTTTGGGTCAGGTTCTAATTTATGTCTCGGCCATGGAGAGCAGCATGATGAGTTCCAACCACGTGCAATCCAATCATTTAGAAGGAAGGGTATTCATGTAGTTCGAGTCTCTGCAGGTGACGAGCATGCAGTGGCACTTGATTCCAGTGGATTTGTATATACCTGGGGTAAAGGGTACTGTGGTGCACTAGGCCATGGGGATGAGATTGACAAGACTACCCCGGAACTCTTGAGCAGAGTTCAAAGCCAGCTGGCCGTGCAGGTGTGTGCAAGAAAACGGAAGACCTTTGTTCTAATGGATAATGGTTTAGTATATGGTTGTGGTTGGATGGGGTTTGGTAGCCTTGGGTTTACAGACAGGGGACTATCTGACAAAATCTTGAGCCCTCGCATCCTTGATAGCTTAAGACCTCATCATGTTTCTCAGATTAGCACTGGGCTGTACCATACTGTTGCTATCACTAACTCTGGACAACTTTTTGGATTCGGAGATAATGAAAGAGCACAACTTGGGCACGATACACTGAGAGCATGCCTCAAACCAACTGAAATTTTTATAGCAGAAATGACTGATGAGGTGAATCTTGTTTCAGAAAACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

492

Amino Acids

53.59

Weight (kDa)

7.06

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 107 - 319 2.7e-44 RCC1-like domain
RCC1_2 PF13540 165 - 192 5e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 181 - 231 1.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 219 - 247 1.3e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 234 - 284 3.7e-13 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 285 - 485 4.4e-09 Alsin RCC1-like domain
RCC1 PF00415 287 - 338 2.4e-12 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 323 - 476 4.5e-32 RCC1-like domain
RCC1_2 PF13540 325 - 353 8.9e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 342 - 382 2.4e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 432 - 461 7.2e-08 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 980, 1126
AasI GACNNNNNNGTC 1 cut(s) 744
Acc36I ACCTGC 3 cut(s) 649, 980, 1126
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 3 cut(s) 107, 393, 870
AciI CCGC 4 cut(s) 5, 176, 250, 255
AcoI YGGCCR 4 cut(s) 427, 605, 904, 1128
AcsI RAATTY 3 cut(s) 645, 788, 1425
AcuI CTGAAG 1 cut(s) 309
AcvI CACGTG 1 cut(s) 938
AfaI GTAC 3 cut(s) 11, 1052, 1319
AfiI CCNNNNNNNGG 1 cut(s) 357
AflII CTTAAG 1 cut(s) 1279
AflIII ACRYGT 3 cut(s) 490, 557, 716
AgsI TTSAA 3 cut(s) 24, 788, 1118
AhdI GACNNNNNGTC 1 cut(s) 571
AjnI CCWGG 1 cut(s) 1037
AluBI AGCT 6 cut(s) 187, 411, 686, 848, 1126, 1278
AluI AGCT 6 cut(s) 187, 411, 686, 848, 1126, 1278
Alw21I GWGCWC 3 cut(s) 68, 1063, 1381
Alw26I GTCTC 6 cut(s) 314, 434, 508, 747, 905, 988
Alw44I GTGCAC 1 cut(s) 1059
ApaLI GTGCAC 1 cut(s) 1059
ApeKI GCWGC 3 cut(s) 524, 824, 916
ApoI RAATTY 3 cut(s) 645, 788, 1425
AspA2I CCTAGG 1 cut(s) 620
AspS9I GGNCC 4 cut(s) 434, 496, 723, 830
AsuC2I CCSGG 3 cut(s) 70, 466, 1097
AsuHPI GGTGA 2 cut(s) 1004, 1465
AvaII GGWCC 2 cut(s) 496, 830
AvrII CCTAGG 1 cut(s) 620
BaeGI GKGCMC 2 cut(s) 1063, 1392
BaeI ACNNNNGTAYC 2 cut(s) 1042, 1075
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 1 cut(s) 1262
BauI CACGAG 1 cut(s) 397
BbrPI CACGTG 1 cut(s) 938
BbsI GAAGAC 1 cut(s) 1163
Bbv12I GWGCWC 3 cut(s) 68, 1063, 1381
BbvI GCAGC 3 cut(s) 511, 811, 928
BccI CCATC 2 cut(s) 487, 1198
BceAI ACGGC 2 cut(s) 68, 1115
BciT130I CCWGG 1 cut(s) 1039
BciVI GTATCC 1 cut(s) 153
BcnI CCSGG 3 cut(s) 70, 466, 1097
BcoDI GTCTC 6 cut(s) 314, 434, 508, 747, 905, 988
BfaI CTAG 3 cut(s) 114, 621, 1064
BfmI CTRYAG 1 cut(s) 987
BfrI CTTAAG 1 cut(s) 1279
BfuAI ACCTGC 3 cut(s) 649, 980, 1126
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 4 cut(s) 177, 525, 825, 917
BlnI CCTAGG 1 cut(s) 620
BlsI GCNGC 4 cut(s) 178, 526, 826, 918
Bme1390I CCNGG 4 cut(s) 70, 466, 1039, 1097
Bme18I GGWCC 2 cut(s) 496, 830
BmeRI GACNNNNNGTC 1 cut(s) 571
BmgT120I GGNCC 4 cut(s) 434, 496, 723, 830
BmiI GGNNCC 3 cut(s) 406, 724, 808
BmrFI CCNGG 4 cut(s) 70, 466, 1039, 1097
BmrI ACTGGG 1 cut(s) 1320
BmsI GCATC 2 cut(s) 330, 1275
BmuI ACTGGG 1 cut(s) 1320
BpiI GAAGAC 1 cut(s) 1163
BplI GAGNNNNNCTC 2 cut(s) 1395, 1427
BpmI CTGGAG 2 cut(s) 468, 564
BpuEI CTTGAG 3 cut(s) 779, 1126, 1276
BpuMI CCSGG 3 cut(s) 70, 466, 1097
BsaAI YACGTR 1 cut(s) 938
BsaJI CCNNGG 8 cut(s) 294, 430, 620, 907, 1038, 1069, 1095, 1219
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 3 cut(s) 358, 1020, 1315
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 1039
BseDI CCNNGG 8 cut(s) 294, 430, 620, 907, 1038, 1069, 1095, 1219
BseGI GGATG 3 cut(s) 1081, 1209, 1266
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 6 cut(s) 91, 245, 429, 519, 1313, 1391
BseNI ACTGG 3 cut(s) 358, 1020, 1315
BseSI GKGCMC 2 cut(s) 1063, 1392
BseXI GCAGC 3 cut(s) 511, 811, 928
BsgI GTGCAG 1 cut(s) 1154
BsiHKAI GWGCWC 3 cut(s) 68, 1063, 1381
BsiSI CCGG 4 cut(s) 69, 466, 604, 1097
BslFI GGGAC 2 cut(s) 578, 1251
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 6 cut(s) 314, 434, 508, 747, 905, 988
BsmFI GGGAC 2 cut(s) 578, 1251
BsmI GAATGC 1 cut(s) 232
Bsp1286I GDGCHC 5 cut(s) 68, 1063, 1262, 1381, 1392
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 2 cut(s) 907, 1069
BspACI CCGC 4 cut(s) 5, 176, 250, 255
BspCNI CTCAG 6 cut(s) 90, 244, 430, 518, 1312, 1392
BspLI GGNNCC 3 cut(s) 406, 724, 808
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 3 cut(s) 649, 980, 1126
BspTI CTTAAG 1 cut(s) 1279
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 642
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 3 cut(s) 358, 1020, 1315
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 8 cut(s) 294, 430, 620, 907, 1038, 1069, 1095, 1219
BssMI GATC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 397
BssT1I CCWWGG 5 cut(s) 430, 620, 907, 1069, 1219
Bst2BI CACGAG 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 1039
Bst4CI ACNGT 3 cut(s) 238, 1055, 1327
Bst6I CTCTTC 2 cut(s) 216, 263
BstAFI CTTAAG 1 cut(s) 1279
BstBAI YACGTR 1 cut(s) 938
BstC8I GCNNGC 6 cut(s) 331, 656, 1002, 1124, 1128, 1408
BstDEI CTNAG 7 cut(s) 77, 231, 438, 505, 844, 1299, 1400
BstDSI CCRYGG 3 cut(s) 294, 907, 1069
BstF5I GGATG 3 cut(s) 1081, 1209, 1266
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 6 cut(s) 314, 434, 508, 747, 905, 988
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 247, 1132
BstNI CCWGG 1 cut(s) 1039
BstNSI RCATGY 5 cut(s) 494, 561, 720, 1004, 1410
BstSCI CCNGG 4 cut(s) 68, 464, 1037, 1095
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 2 cut(s) 1063, 1392
BstV1I GCAGC 3 cut(s) 511, 811, 928
BstV2I GAAGAC 1 cut(s) 1163
BsuI GTATCC 1 cut(s) 153
BtgI CCRYGG 3 cut(s) 294, 907, 1069
BtsCI GGATG 3 cut(s) 1081, 1209, 1266
BtsI GCAGTG 1 cut(s) 1011
BtsIMutI CAGTG 7 cut(s) 85, 243, 351, 1011, 1027, 1308, 1397
BveI ACCTGC 3 cut(s) 649, 980, 1126
Cac8I GCNNGC 6 cut(s) 331, 656, 1002, 1124, 1128, 1408
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 4 cut(s) 434, 496, 723, 830
Csp6I GTAC 3 cut(s) 10, 1051, 1318
CviQI GTAC 3 cut(s) 10, 1051, 1318
DdeI CTNAG 7 cut(s) 77, 231, 438, 505, 844, 1299, 1400
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 744
DriI GACNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 744
EaeI YGGCCR 4 cut(s) 427, 605, 904, 1128
Eam1104I CTCTTC 2 cut(s) 216, 263
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 2 cut(s) 216, 263
Eco130I CCWWGG 5 cut(s) 430, 620, 907, 1069, 1219
Eco147I AGGCCT 2 cut(s) 16, 619
Eco24I GRGCYC 1 cut(s) 1262
Eco47I GGWCC 2 cut(s) 496, 830
Eco57I CTGAAG 1 cut(s) 309
Eco72I CACGTG 1 cut(s) 938
EcoO109I RGGNCCY 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 1037
EcoT14I CCWWGG 5 cut(s) 430, 620, 907, 1069, 1219
EcoT22I ATGCAT 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 1262
ErhI CCWWGG 5 cut(s) 430, 620, 907, 1069, 1219
FaqI GGGAC 2 cut(s) 578, 1251
FblI GTMKAC 3 cut(s) 107, 393, 870
Fnu4HI GCNGC 4 cut(s) 177, 525, 825, 917
FokI GGATG 3 cut(s) 1088, 1216, 1253
FriOI GRGCYC 1 cut(s) 1262
Fsp4HI GCNGC 4 cut(s) 177, 525, 825, 917
FspBI CTAG 3 cut(s) 114, 621, 1064
GluI GCNGC 4 cut(s) 177, 525, 825, 917
GsuI CTGGAG 2 cut(s) 468, 564
HapII CCGG 4 cut(s) 69, 466, 604, 1097
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 6 cut(s) 104, 130, 981, 1016, 1359, 1456
HpaII CCGG 4 cut(s) 69, 466, 604, 1097
HphI GGTGA 2 cut(s) 1004, 1465
Hpy166II GTNNAC 5 cut(s) 108, 394, 871, 1061, 1227
Hpy188III TCNNGA 4 cut(s) 543, 1105, 1255, 1344
Hpy8I GTNNAC 5 cut(s) 108, 394, 871, 1061, 1227
HpyAV CCTTC 4 cut(s) 351, 634, 951, 955
HpyCH4III ACNGT 3 cut(s) 238, 1055, 1327
HpyCH4IV ACGT 2 cut(s) 840, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 1132
HpyF3I CTNAG 7 cut(s) 77, 231, 438, 505, 844, 1299, 1400
HpySE526I ACGT 2 cut(s) 840, 937
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 71, 298, 812
Lsp1109I GCAGC 3 cut(s) 511, 811, 928
LweI GCATC 2 cut(s) 330, 1275
MaeI CTAG 3 cut(s) 114, 621, 1064
MaeII ACGT 2 cut(s) 840, 937
MaeIII GTNAC 4 cut(s) 454, 836, 850, 992
MalI GATC 1 cut(s) 90
MbiI CCGCTC 1 cut(s) 250
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 233, 280, 1168
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 5 cut(s) 68, 1063, 1262, 1381, 1392
MlsI TGGCCA 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 3 cut(s) 113, 139, 990
MmeI TCCRAC 2 cut(s) 955, 1181
Mox20I TGGCCA 1 cut(s) 429
Mph1103I ATGCAT 1 cut(s) 345
MscI TGGCCA 1 cut(s) 429
MseI TTAA 2 cut(s) 675, 1280
MslI CAYNNNNRTG 2 cut(s) 519, 1074
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 187, 1126
MspCI CTTAAG 1 cut(s) 1279
MspI CCGG 4 cut(s) 69, 466, 604, 1097
MspR9I CCNGG 4 cut(s) 70, 466, 1039, 1097
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 1039
MwoI GCNNNNNNNGC 2 cut(s) 247, 1132
NciI CCSGG 3 cut(s) 70, 466, 1097
NcoI CCATGG 2 cut(s) 907, 1069
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 3 cut(s) 406, 724, 808
NmeAIII GCCGAG 1 cut(s) 882
NmuCI GTSAC 2 cut(s) 454, 992
NsiI ATGCAT 1 cut(s) 345
NspI RCATGY 5 cut(s) 494, 561, 720, 1004, 1410
PaeI GCATGC 2 cut(s) 1004, 1410
PaqCI CACCTGC 2 cut(s) 980, 1126
PceI AGGCCT 2 cut(s) 16, 619
PciI ACATGT 3 cut(s) 490, 557, 716
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 1016, 1359, 1456
PfoI TCCNGGA 1 cut(s) 68
PkrI GCNGC 4 cut(s) 178, 526, 826, 918
PleI GAGTC 3 cut(s) 112, 138, 989
PmaCI CACGTG 1 cut(s) 938
PmlI CACGTG 1 cut(s) 938
PpsI GAGTC 3 cut(s) 112, 138, 989
Ppu21I YACGTR 1 cut(s) 938
PscI ACATGT 3 cut(s) 490, 557, 716
Psp6I CCWGG 1 cut(s) 1037
PspCI CACGTG 1 cut(s) 938
PspGI CCWGG 1 cut(s) 1037
PspN4I GGNNCC 3 cut(s) 406, 724, 808
PspPI GGNCC 4 cut(s) 434, 496, 723, 830
PstI CTGCAG 1 cut(s) 991
PvuII CAGCTG 2 cut(s) 187, 1126
RsaI GTAC 3 cut(s) 11, 1052, 1319
RsaNI GTAC 3 cut(s) 10, 1051, 1318
RseI CAYNNNNRTG 2 cut(s) 519, 1074
SalI GTCGAC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 675, 1280
SatI GCNGC 4 cut(s) 177, 525, 825, 917
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 4 cut(s) 434, 496, 723, 830
SchI GAGTC 3 cut(s) 113, 139, 990
ScrFI CCNGG 4 cut(s) 70, 466, 1039, 1097
SduI GDGCHC 5 cut(s) 68, 1063, 1262, 1381, 1392
SfaNI GCATC 2 cut(s) 330, 1275
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 2 cut(s) 496, 830
SmiMI CAYNNNNRTG 2 cut(s) 519, 1074
SmlI CTYRAG 4 cut(s) 794, 1105, 1255, 1279
SmoI CTYRAG 4 cut(s) 794, 1105, 1255, 1279
SphI GCATGC 2 cut(s) 1004, 1410
SseBI AGGCCT 2 cut(s) 16, 619
SsiI CCGC 4 cut(s) 5, 176, 250, 255
SspI AATATT 1 cut(s) 612
SspMI CTAG 3 cut(s) 114, 621, 1064
StuI AGGCCT 2 cut(s) 16, 619
StyD4I CCNGG 4 cut(s) 68, 464, 1037, 1095
StyI CCWWGG 5 cut(s) 430, 620, 907, 1069, 1219
TaaI ACNGT 3 cut(s) 238, 1055, 1327
TaiI ACGT 2 cut(s) 843, 940
TaqI TCGA 2 cut(s) 107, 979
TaqII GACCGA 2 cut(s) 147, 734
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 3 cut(s) 1016, 1359, 1456
Tru1I TTAA 2 cut(s) 675, 1280
Tru9I TTAA 2 cut(s) 675, 1280
TscAI CASTG 7 cut(s) 85, 243, 358, 1011, 1027, 1315, 1404
TseFI GTSAC 2 cut(s) 454, 992
TseI GCWGC 3 cut(s) 524, 824, 916
Tsp45I GTSAC 2 cut(s) 454, 992
TspDTI ATGAA 4 cut(s) 375, 653, 959, 1386
TspGWI ACGGA 3 cut(s) 283, 876, 1168
TspRI CASTG 7 cut(s) 85, 243, 358, 1011, 1027, 1315, 1404
Vha464I CTTAAG 1 cut(s) 1279
VneI GTGCAC 1 cut(s) 1059
VpaK11BI GGWCC 2 cut(s) 496, 830
XapI RAATTY 3 cut(s) 645, 788, 1425
XceI RCATGY 5 cut(s) 494, 561, 720, 1004, 1410
XmaJI CCTAGG 1 cut(s) 620
XmiI GTMKAC 3 cut(s) 107, 393, 870
XspI CTAG 3 cut(s) 114, 621, 1064
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.