Prupe.4G275300_v2.0.a1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
22947853 .. 22948183
331 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G275300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 249 bp
ATGTTTTCTTTTATCTCGAGTTCCAAGACACAATCGAAGCCAAGTGGATTGCAACTAGTCTCCAACTCGATGCACCATAAAAGAGTTGTAGCATGTAAACAACAAGAAGAAGAAGAAACAGATGCAAATGAATTTGCAATGGCGGATGCAACATTCATTGCACTCAATTATCTAGAAGAGTCATTTGAACACCTTTCAAGGTGTTTGATCAAAACCAGAGTTTCCCTCCTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.33

Weight (kDa)

6.03

Isoelectric Point (pI)

81.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022452)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 131
AgsI TTSAA 2 cut(s) 188, 198
AhlI ACTAGT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 16
ApoI RAATTY 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 16
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 3 cut(s) 56, 173, 247
BmeT110I CYCGRG 1 cut(s) 16
BmsI GCATC 3 cut(s) 60, 112, 136
BplI GAGNNNNNCTC 2 cut(s) 210, 242
Bse3DI GCAATG 2 cut(s) 144, 156
BseGI GGATG 2 cut(s) 151, 234
BseMI GCAATG 2 cut(s) 144, 156
BseRI GAGGAG 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 16
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 144, 156
BssMI GATC 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 171
BstF5I GGATG 2 cut(s) 151, 234
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 96
BtsCI GGATG 2 cut(s) 151, 234
CviAII CATG 1 cut(s) 93
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 16
FaeI CATG 1 cut(s) 96
FaiI YATR 2 cut(s) 78, 94
FatI CATG 1 cut(s) 92
FbaI TGATCA 1 cut(s) 207
FokI GGATG 2 cut(s) 158, 221
FspBI CTAG 3 cut(s) 56, 173, 247
Hin1II CATG 1 cut(s) 96
HinfI GANTC 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 98
Hpy188III TCNNGA 2 cut(s) 16, 173
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4V TGCA 6 cut(s) 52, 73, 125, 137, 149, 161
Hsp92II CATG 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 207
LpnPI CCDG 1 cut(s) 229
LweI GCATC 3 cut(s) 60, 112, 136
MaeI CTAG 3 cut(s) 56, 173, 247
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 4 cut(s) 119, 122, 125, 188
MluCI AATT 2 cut(s) 131, 166
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 3 cut(s) 236, 239, 248
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 96
NspI RCATGY 1 cut(s) 96
PaeR7I CTCGAG 1 cut(s) 16
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 1 cut(s) 188
SetI ASST 2 cut(s) 195, 203
SfaNI GCATC 3 cut(s) 60, 112, 136
Sfr274I CTCGAG 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 2 cut(s) 131, 166
SsiI CCGC 1 cut(s) 143
SspMI CTAG 3 cut(s) 56, 173, 247
TaqI TCGA 3 cut(s) 17, 35, 68
TasI AATT 2 cut(s) 131, 166
TspDTI ATGAA 2 cut(s) 144, 145
XapI RAATTY 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 1 cut(s) 96
XhoI CTCGAG 1 cut(s) 16
XspI CTAG 3 cut(s) 56, 173, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.