Prupe.8G175500_v2.0.a1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0022452
Physical Location & Seq
Forward (+)
17804834 .. 17805676
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G175500.1

Sequence Viewer

Length: 804 bp
ATGCTCGCTCAAACAGCGTTCCCCTCAACAACGCACCCTCTCATTTCAGAATTTCATGAGCAGTTGTGCAGATTGAGGACTTCTGGAACCGCCTCTTCATCCTCTACATCAGTAAACCAAAGCCTAAATGGCCTTAAGGATTTGTATGATTCCTTAGCTCAAGAGGAGAACGATGAGCTATTGGATGGATCTGTTAGGCTATTGGATGTATGTAGTGTCGCCAAGGATACCTTGCTCCAAACCAAAGAATGCACGATAGAAATTTTATCAATCATCCGCAGAAGACGGGGAGGAAAAACTGAGCTTGCAAGTGAGGTTAAGAAATTATTGATAATCAGGAAGGTGATGAAAAAAGCTGTCTGCAAGGCCTCAGGAAATTTGAAGGGTGTTTCTCCCTTCAGTAAGGAGCATGAGGCTGTGGCTATGGTTAGCATGTTGAAAGAGATGGAAGCAGTTACTCAGACTGTGTTTGACTCCATATTTTATTTTATCTCGGGTCCAAAGACACAATCAAAGCCAAGTGGGTTGCAACTAGTCTCAAACTTGATGCGCCATAAAAGAGTAGCATGTAAAGAAGAAGAAGAAGAAGAAGAAACAGATGCAAATGAATTTGCAATGGTGTATGCAGCATTGCACTCAACTGTTGGTCACAAGACAAAAGAATCTGATAACATTATTCAGAATGCACAAACCCAACTGCAAAATTTAGAGTTGTGCATACAAGATCTAGAAGAGTCACTTGAACACCTTTCAAGGCGTTTGATCAAAACCAGAGTTTCCCTGCTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

268

Amino Acids

29.83

Weight (kDa)

6.27

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022452)

Species Orthologous Gene IDs
prunus_persica Prupe.4G275300_v2.0.a1 Prupe.8G131200_v2.0.a1 Prupe.8G175100_v2.0.a1 Prupe.8G175500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 90, 277
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 5 cut(s) 50, 261, 376, 608, 703
AcuI CTGAAG 1 cut(s) 382
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 4 cut(s) 382, 439, 743, 753
AhlI ACTAGT 1 cut(s) 532
AluBI AGCT 4 cut(s) 158, 178, 304, 356
AluI AGCT 4 cut(s) 158, 178, 304, 356
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 2 cut(s) 130, 366
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 5 cut(s) 50, 261, 376, 608, 703
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 1 cut(s) 497
AxyI CCTNAGG 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 638
BccI CCATC 2 cut(s) 179, 439
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 762
BcoDI GTCTC 1 cut(s) 541
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 3 cut(s) 533, 728, 802
BfrI CTTAAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 129
BglII AGATCT 1 cut(s) 724
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
Bme18I GGWCC 1 cut(s) 497
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 88, 498
BmsI GCATC 2 cut(s) 537, 589
BpiI GAAGAC 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 370
Bse3DI GCAATG 2 cut(s) 621, 629
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 5 cut(s) 98, 190, 211, 273, 789
BseMI GCAATG 2 cut(s) 621, 629
BseMII CTCAG 3 cut(s) 291, 384, 473
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 638
BsgI GTGCAG 1 cut(s) 88
BshFI GGCC 2 cut(s) 132, 368
BsiHKCI CYCGRG 1 cut(s) 493
BsmAI GTCTC 1 cut(s) 541
BsmI GAATGC 2 cut(s) 254, 688
BsnI GGCC 2 cut(s) 132, 368
BsoBI CYCGRG 1 cut(s) 493
Bsp143I GATC 3 cut(s) 188, 724, 762
BspACI CCGC 2 cut(s) 90, 277
BspANI GGCC 2 cut(s) 132, 368
BspCNI CTCAG 3 cut(s) 292, 383, 472
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 88, 498
BspPI GGATC 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 621, 629
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 188, 724, 762
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 466, 643
Bst6I CTCTTC 2 cut(s) 100, 726
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 6, 306
BstDEI CTNAG 4 cut(s) 154, 300, 370, 459
BstF5I GGATG 5 cut(s) 98, 190, 211, 273, 789
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 3 cut(s) 191, 727, 765
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 3 cut(s) 188, 724, 762
BstMWI GCNNNNNNNGC 2 cut(s) 14, 129
BstNSI RCATGY 2 cut(s) 436, 570
BstV1I GCAGC 1 cut(s) 638
BstV2I GAAGAC 1 cut(s) 289
BstX2I RGATCY 2 cut(s) 188, 724
BstYI RGATCY 2 cut(s) 188, 724
Bsu36I CCTNAGG 1 cut(s) 370
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 132, 368
BtsCI GGATG 5 cut(s) 98, 190, 211, 273, 789
Cac8I GCNNGC 2 cut(s) 6, 306
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 497
CviAII CATG 4 cut(s) 56, 410, 433, 567
DdeI CTNAG 4 cut(s) 154, 300, 370, 459
DpnI GATC 3 cut(s) 190, 726, 764
DpnII GATC 3 cut(s) 188, 724, 762
Eam1104I CTCTTC 2 cut(s) 100, 726
EarI CTCTTC 2 cut(s) 100, 726
Eco130I CCWWGG 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 382
Eco81I CCTNAGG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 4 cut(s) 59, 413, 436, 570
FalI AAGNNNNNCTT 4 cut(s) 215, 247, 723, 755
FatI CATG 4 cut(s) 55, 409, 432, 566
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 5 cut(s) 85, 197, 218, 260, 776
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 3 cut(s) 533, 728, 802
GlaI GCGC 1 cut(s) 551
GluI GCNGC 1 cut(s) 627
HaeIII GGCC 2 cut(s) 132, 368
HhaI GCGC 1 cut(s) 552
Hin1II CATG 4 cut(s) 59, 413, 436, 570
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HinfI GANTC 4 cut(s) 149, 473, 662, 734
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 49, 462, 667, 681
Hpy188III TCNNGA 6 cut(s) 56, 84, 161, 337, 372, 728
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 334, 376, 406
HpyCH4III ACNGT 2 cut(s) 466, 643
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 129
HpyF3I CTNAG 4 cut(s) 154, 300, 370, 459
Hsp92II CATG 4 cut(s) 59, 413, 436, 570
HspAI GCGC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 3 cut(s) 188, 724, 762
LmnI GCTCC 2 cut(s) 240, 406
LpnPI CCDG 5 cut(s) 69, 322, 357, 784, 794
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 2 cut(s) 537, 589
MaeI CTAG 3 cut(s) 533, 728, 802
MaeIII GTNAC 3 cut(s) 454, 647, 735
MalI GATC 3 cut(s) 190, 726, 764
MboI GATC 3 cut(s) 188, 724, 762
MboII GAAGA 9 cut(s) 87, 294, 587, 590, 593, 596, 599, 602, 743
MflI RGATCY 2 cut(s) 188, 724
MluCI AATT 6 cut(s) 50, 261, 323, 376, 608, 703
MlyI GAGTC 2 cut(s) 467, 743
MseI TTAA 2 cut(s) 135, 318
MspCI CTTAAG 1 cut(s) 134
Mva1269I GAATGC 2 cut(s) 254, 688
MwoI GCNNNNNNNGC 2 cut(s) 14, 129
NdeII GATC 3 cut(s) 188, 724, 762
NlaIII CATG 4 cut(s) 59, 413, 436, 570
NlaIV GGNNCC 2 cut(s) 88, 498
NmuCI GTSAC 2 cut(s) 647, 735
NspI RCATGY 2 cut(s) 436, 570
PagI TCATGA 1 cut(s) 55
PceI AGGCCT 1 cut(s) 368
PctI GAATGC 2 cut(s) 254, 688
PfeI GAWTC 2 cut(s) 149, 662
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 2 cut(s) 467, 742
PpsI GAGTC 2 cut(s) 467, 742
PspN4I GGNNCC 2 cut(s) 88, 498
PspPI GGNCC 1 cut(s) 497
PsuI RGATCY 2 cut(s) 188, 724
SaqAI TTAA 2 cut(s) 135, 318
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 3 cut(s) 188, 724, 762
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 2 cut(s) 467, 743
SetI ASST 8 cut(s) 160, 180, 233, 306, 318, 345, 358, 750
SfaNI GCATC 2 cut(s) 537, 589
SinI GGWCC 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 134, 159
SmoI CTYRAG 2 cut(s) 134, 159
SpeI ACTAGT 1 cut(s) 532
Sse9I AATT 6 cut(s) 50, 261, 323, 376, 608, 703
SseBI AGGCCT 1 cut(s) 368
SsiI CCGC 2 cut(s) 90, 277
SspMI CTAG 3 cut(s) 533, 728, 802
StuI AGGCCT 1 cut(s) 368
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 466, 643
TasI AATT 6 cut(s) 50, 261, 323, 376, 608, 703
TfiI GAWTC 2 cut(s) 149, 662
Tru1I TTAA 2 cut(s) 135, 318
Tru9I TTAA 2 cut(s) 135, 318
TseFI GTSAC 2 cut(s) 647, 735
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 2 cut(s) 647, 735
TspDTI ATGAA 4 cut(s) 44, 87, 362, 621
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 5 cut(s) 50, 261, 376, 608, 703
XbaI TCTAGA 1 cut(s) 727
XceI RCATGY 2 cut(s) 436, 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XspI CTAG 3 cut(s) 533, 728, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.