Prupe.8G175100_v2.0.a1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0022452
Physical Location & Seq
Reverse (-)
17780837 .. 17781289
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G175100.1

Sequence Viewer

Length: 375 bp
ATGATGAAAAAGGCGATTCAGAAGGCCTTAGGAAATTTGAAGGGTGCTTCTCCCTCCAGTAAAGAGATTGAGGCTGTGGCAATGGTTAGCATGCTGAAAGAGGGGGAAGCAGTTACTCGGACTGTATTTAAAACGATGTTCTCTTTTATCTCGGGTCCGAAGACACAATCAAAGCAAAGTGGATGGTCACTGGTCTCCAATTTGATGCACCGTAAAAGAGTACCAGCATATAAGGAAGAAGAAACGTATGCAAATGAATTTGCAAATGTGGATGGAGCTTTGAGCTCATTTGTTGATCTAGAAGAGTCACTTGAACACCTTTCAAGGCCTTTGATCAAAACCAGAGTTTCCTTCCTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

125

Amino Acids

13.82

Weight (kDa)

9.43

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022452)

Species Orthologous Gene IDs
prunus_persica Prupe.4G275300_v2.0.a1 Prupe.8G131200_v2.0.a1 Prupe.8G175100_v2.0.a1 Prupe.8G175500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 34, 257
AfaI GTAC 1 cut(s) 222
AgsI TTSAA 3 cut(s) 40, 314, 324
AluBI AGCT 2 cut(s) 278, 285
AluI AGCT 2 cut(s) 278, 285
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 2 cut(s) 24, 326
ApoI RAATTY 2 cut(s) 34, 257
AspS9I GGNCC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 28
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 287
BccI CCATC 2 cut(s) 177, 266
BclI TGATCA 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 299, 373
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 57, 195
Bse21I CCTNAGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 87
BseGI GGATG 3 cut(s) 188, 277, 360
BseMI GCAATG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 57, 195
BshFI GGCC 2 cut(s) 26, 328
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 26, 328
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 295, 333
BspANI GGCC 2 cut(s) 26, 328
BspLI GGNNCC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 2 cut(s) 57, 195
BssMI GATC 2 cut(s) 295, 333
Bst4CI ACNGT 2 cut(s) 124, 212
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 3 cut(s) 188, 277, 360
BstKTI GATC 2 cut(s) 298, 336
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 2 cut(s) 295, 333
BstNSI RCATGY 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 167
Bsu36I CCTNAGG 1 cut(s) 28
BsuRI GGCC 2 cut(s) 26, 328
BtsCI GGATG 3 cut(s) 188, 277, 360
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 221
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 26, 74, 278, 285, 328
CviKI_1 RGCY 5 cut(s) 26, 74, 278, 285, 328
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 1 cut(s) 28
DpnI GATC 2 cut(s) 297, 335
DpnII GATC 2 cut(s) 295, 333
DraI TTTAAA 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 285
Eco147I AGGCCT 2 cut(s) 26, 328
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 287
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 92, 229, 231, 249
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 333
FokI GGATG 3 cut(s) 195, 284, 347
FriOI GRGCYC 1 cut(s) 287
FspBI CTAG 2 cut(s) 299, 373
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 2 cut(s) 26, 328
Hin1II CATG 1 cut(s) 94
HinfI GANTC 2 cut(s) 16, 305
Hpy188I TCNGA 3 cut(s) 21, 120, 159
Hpy188III TCNNGA 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 16, 34, 361
HpyCH4III ACNGT 2 cut(s) 124, 212
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 208, 251, 263
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 2 cut(s) 295, 333
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 4 cut(s) 70, 176, 237, 355
LweI GCATC 1 cut(s) 195
MaeI CTAG 2 cut(s) 299, 373
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 112, 186, 306
MalI GATC 2 cut(s) 297, 335
MboI GATC 2 cut(s) 295, 333
MboII GAAGA 4 cut(s) 172, 248, 251, 314
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 3 cut(s) 34, 199, 257
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 5 cut(s) 64, 64, 94, 365, 374
MseI TTAA 1 cut(s) 129
NdeII GATC 2 cut(s) 295, 333
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 186, 306
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PceI AGGCCT 2 cut(s) 26, 328
PfeI GAWTC 1 cut(s) 16
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 155
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 2 cut(s) 295, 333
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 287
SetI ASST 4 cut(s) 248, 280, 287, 321
SfaNI GCATC 1 cut(s) 195
SinI GGWCC 1 cut(s) 155
SphI GCATGC 1 cut(s) 94
Sse9I AATT 3 cut(s) 34, 199, 257
SseBI AGGCCT 2 cut(s) 26, 328
SspMI CTAG 2 cut(s) 299, 373
SstI GAGCTC 1 cut(s) 287
StuI AGGCCT 2 cut(s) 26, 328
TaaI ACNGT 2 cut(s) 124, 212
TaiI ACGT 1 cut(s) 248
TasI AATT 3 cut(s) 34, 199, 257
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 186, 306
Tsp45I GTSAC 2 cut(s) 186, 306
TspDTI ATGAA 2 cut(s) 20, 270
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 2 cut(s) 34, 257
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 94
XspI CTAG 2 cut(s) 299, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.