Prupe.8G131200_v2.0.a1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0022452
Physical Location & Seq
Forward (+)
15368404 .. 15368811
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G131200.1

Sequence Viewer

Length: 408 bp
ATGGAAAAGGCGATTCGCAAGGCCTTAGGAAATTTGAAGGGTGTTTCTCCCTTCTATAAAGAGACTGAGGCTGTGGCAATGGTTAGCATGCCGAAAGAGGTGGAAGCAGTTACTCATACTGTATTTAAATCGATGTTCTCTTTTAGCTCGGGTCCAAAGACACAATCAAAGCAAAGTGGATGGTCACTGGTCTCCAATTTGATGCACCATAAAAGAGTAGCAGCATATAAGGAAGAAGAAACAGATGTAAATGAATTTGCAAATGTAGATGCAGCTTTGAACTCATTTGTTGGTCACAAGACAGCAGAATCTGATAACATCATTGAGAACACACAAAACCAACTGCAAAATTTGGAGTTGTGCATACAAGATCTACAAGAGTCACTTGAACTCTTTCAAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

5.35

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022452)

Species Orthologous Gene IDs
prunus_persica Prupe.4G275300_v2.0.a1 Prupe.8G131200_v2.0.a1 Prupe.8G175100_v2.0.a1 Prupe.8G175500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 31, 254, 349
AgsI TTSAA 4 cut(s) 37, 280, 389, 398
AluBI AGCT 2 cut(s) 147, 275
AluI AGCT 2 cut(s) 147, 275
Alw26I GTCTC 2 cut(s) 56, 196
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 221, 272
ApoI RAATTY 3 cut(s) 31, 254, 349
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 25
BbvI GCAGC 2 cut(s) 233, 284
BccI CCATC 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 56, 196
BglII AGATCT 1 cut(s) 370
BisI GCNGC 2 cut(s) 222, 273
BlsI GCNGC 2 cut(s) 223, 274
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 2 cut(s) 192, 259
Bsa29I ATCGAT 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 84
BseCI ATCGAT 1 cut(s) 131
BseGI GGATG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 233, 284
BshFI GGCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 56, 196
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 148
Bsp143I GATC 1 cut(s) 370
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 192
BssMI GATC 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 25, 66
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 56, 196
BstMBI GATC 1 cut(s) 370
BstNSI RCATGY 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 233, 284
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 131
Bsu36I CCTNAGG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 131
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 89
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 131
CviAII CATG 1 cut(s) 88
CviJI RGCY 5 cut(s) 23, 71, 147, 275, 402
CviKI_1 RGCY 5 cut(s) 23, 71, 147, 275, 402
DdeI CTNAG 2 cut(s) 25, 66
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
DraI TTTAAA 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 148
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 57, 89, 117, 210, 226, 228, 365
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 222, 273
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 2 cut(s) 222, 273
GluI GCNGC 2 cut(s) 222, 273
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 1 cut(s) 91
HinfI GANTC 3 cut(s) 13, 308, 380
Hpy188I TCNGA 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 31, 61
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 205, 260, 272, 346, 363
HpyF3I CTNAG 2 cut(s) 25, 66
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 233, 284
LweI GCATC 2 cut(s) 192, 259
MaeIII GTNAC 4 cut(s) 109, 183, 293, 381
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 2 cut(s) 245, 248
MflI RGATCY 1 cut(s) 370
MluCI AATT 4 cut(s) 31, 196, 254, 349
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 2 cut(s) 61, 91
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 1 cut(s) 126
NdeII GATC 1 cut(s) 370
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 3 cut(s) 183, 293, 381
NspI RCATGY 1 cut(s) 91
PaeI GCATGC 1 cut(s) 91
PceI AGGCCT 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 13, 308
PkrI GCNGC 2 cut(s) 223, 274
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 370
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 222, 273
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 389
SetI ASST 3 cut(s) 102, 149, 277
SfaNI GCATC 2 cut(s) 192, 259
SgeI CNNG 9 cut(s) 31, 100, 160, 162, 200, 310, 380, 389, 398
SinI GGWCC 1 cut(s) 152
SmiI ATTTAAAT 1 cut(s) 127
SphI GCATGC 1 cut(s) 91
Sse9I AATT 4 cut(s) 31, 196, 254, 349
SseBI AGGCCT 1 cut(s) 23
StuI AGGCCT 1 cut(s) 23
SwaI ATTTAAAT 1 cut(s) 127
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 131
TasI AATT 4 cut(s) 31, 196, 254, 349
TfiI GAWTC 2 cut(s) 13, 308
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 3 cut(s) 183, 293, 381
TseI GCWGC 2 cut(s) 221, 272
Tsp45I GTSAC 3 cut(s) 183, 293, 381
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 3 cut(s) 31, 254, 349
XceI RCATGY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.