Prupe.5G021200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0019711
Physical Location & Seq
Forward (+)
2328243 .. 2329370
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G021200.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 246 bp
ATGCCGCTTGGCTTTCAGGTTGTGCCGGGCTTGGATCTAAAGAGCTTTGACATATTTCTGAAGACATGGAGCAGATGCGCTTCTGGTCAAATTGTCACCAGTACCGGGTCTTTTCTTTCCAGGAAGTGCTTGACTGGAGATTTCTTGTCCTTGGAGATTTTCTTCTGGTTTCCTTTGTTAATTGCACTTAGTGGTCAGCTTCTCTTAAATGATCAATACGGGAGACGTGATGCTAGTTACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.11

Weight (kDa)

7.78

Isoelectric Point (pI)

26.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23911
prunus_persica Prupe.5G021200_v2.0.a1
rosa_rugosa Rorug07G0141300
rosa_samantha Rh2DG304200 Rh7AG273100 Rh7BG268500 Rh7CG292300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 191
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 105
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 45, 199
AluI AGCT 2 cut(s) 45, 199
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 2 cut(s) 27, 106
AsuHPI GGTGA 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 2 cut(s) 27, 106
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 3 cut(s) 27, 106, 121
BmgBI CACGTC 1 cut(s) 227
BmrFI CCNGG 3 cut(s) 27, 106, 121
BmsI GCATC 2 cut(s) 65, 220
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 27, 106
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 2 cut(s) 99, 139
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 99, 139
BsiSI CCGG 2 cut(s) 26, 105
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 34, 211
BspACI CCGC 1 cut(s) 5
BspPI GGATC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 99, 139
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 34, 211
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 37, 214
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 34, 211
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 25, 104, 119
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BtrI CACGTC 1 cut(s) 227
CfoI GCGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 66
CviJI RGCY 4 cut(s) 12, 30, 45, 199
CviKI_1 RGCY 4 cut(s) 12, 30, 45, 199
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 188
DpnI GATC 2 cut(s) 36, 213
DpnII GATC 2 cut(s) 34, 211
DraIII CACNNNGTG 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 1 cut(s) 69
FaiI YATR 2 cut(s) 53, 67
FatI CATG 1 cut(s) 65
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 234
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 2 cut(s) 26, 105
HhaI GCGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HpaII CCGG 2 cut(s) 26, 105
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 60, 245
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 34, 211
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 2, 39, 69, 106, 112, 118, 120, 133, 151
LweI GCATC 2 cut(s) 65, 220
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 94, 236
MalI GATC 2 cut(s) 36, 213
MboI GATC 2 cut(s) 34, 211
MboII GAAGA 2 cut(s) 73, 154
MflI RGATCY 1 cut(s) 34
MluCI AATT 2 cut(s) 90, 180
MseI TTAA 2 cut(s) 179, 206
MspI CCGG 2 cut(s) 26, 105
MspR9I CCNGG 3 cut(s) 27, 106, 121
MvaI CCWGG 1 cut(s) 121
NciI CCSGG 2 cut(s) 27, 106
NdeII GATC 2 cut(s) 34, 211
NlaIII CATG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 179, 206
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 34, 211
ScrFI CCNGG 3 cut(s) 27, 106, 121
SetI ASST 4 cut(s) 21, 47, 201, 229
SfaNI GCATC 2 cut(s) 65, 220
Sse9I AATT 2 cut(s) 90, 180
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 25, 104, 119
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 229
TasI AATT 2 cut(s) 90, 180
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 179, 206
Tru9I TTAA 2 cut(s) 179, 206
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.