Prupe.5G056800_v2.0.a1

Olee1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0021237
Physical Location & Seq
Forward (+)
6129613 .. 6130540
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G056800.1

Sequence Viewer

Length: 531 bp
ATGTCGACAAAGTCTAGCACTACTGTCCTTGCCTTTGCCTTTTGTTTCGTGTCCCTCCTTAGTTTCGCTTACTCCAACACCACCGACGACAAAATCTACCTCACCGGCCTGGTCTACTGTGACAACTGCCAATTGAAGTCTATGACCGAGATCAGTAAGATGATTCCAGGTGCAAGGGTGCGATTGGAGTGTAGGGAGGGGGGGAACATAAAATCCAGACGAGAGGGCGAAACCAACCCGCTTGGAATGTACGTGTTTGTGTTGGAAAAATCTAAGGAGCCTTTGGATGATTGTCAAGTGACAGTGTTACACAGCCCTGACCCTGAATGCAAGATTTCCAATGAGGTCGACCCTAACAACAAATCAAAAACTGCGCCGGTGGCCACCCGGAAGCTCAACCTATTGGAAGGAGACAGCGTCGTTTTCATCGGGCCAAGCCACCGTGTTTCCTACCCTCTTGGTTTGGTCGTTGAGAAAGCTCGTCCTGAGTGCAAGCAGTTCGCCCAAGCACGCAAGCATTTTCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

177

Amino Acids

19.61

Weight (kDa)

8.45

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 5, 114, 348
AciI CCGC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 381
AfaI GTAC 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 2 cut(s) 108, 166
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 394, 479
AluI AGCT 2 cut(s) 394, 479
Alw26I GTCTC 1 cut(s) 405
AoxI GGCC 3 cut(s) 106, 381, 431
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 94
BalI TGGCCA 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 2 cut(s) 110, 168
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 110, 168, 388
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 3 cut(s) 110, 168, 388
BpuMI CCSGG 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bse118I RCCGGY 2 cut(s) 104, 376
BseBI CCWGG 2 cut(s) 110, 168
BseGI GGATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 477
BshFI GGCC 3 cut(s) 108, 383, 433
BsiSI CCGG 3 cut(s) 105, 377, 388
BslFI GGGAC 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 3 cut(s) 108, 383, 433
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 239
BspANI GGCC 3 cut(s) 108, 383, 433
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 279
BsrFI RCCGGY 2 cut(s) 104, 376
BssAI RCCGGY 2 cut(s) 104, 376
BssMI GATC 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 110, 168
Bst4CI ACNGT 4 cut(s) 25, 119, 304, 443
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 3 cut(s) 494, 511, 515
BstDEI CTNAG 3 cut(s) 59, 273, 486
BstF5I GGATG 1 cut(s) 292
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 2 cut(s) 110, 168
BstSCI CCNGG 3 cut(s) 108, 166, 386
BsuRI GGCC 3 cut(s) 108, 383, 433
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 494, 511, 515
CfoI GCGC 1 cut(s) 376
Cfr10I RCCGGY 2 cut(s) 104, 376
Cfr13I GGNCC 1 cut(s) 431
CseI GACGC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 8 cut(s) 108, 280, 315, 383, 394, 433, 438, 479
CviKI_1 RGCY 8 cut(s) 108, 280, 315, 383, 394, 433, 438, 479
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 3 cut(s) 59, 273, 486
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 108, 166
FaiI YATR 2 cut(s) 143, 209
FaqI GGGAC 1 cut(s) 37
FauI CCCGC 1 cut(s) 246
FblI GTMKAC 3 cut(s) 5, 114, 348
FokI GGATG 1 cut(s) 299
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 375
HaeIII GGCC 3 cut(s) 108, 383, 433
HapII CCGG 3 cut(s) 105, 377, 388
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 376
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 2 cut(s) 6, 349
HindII GTYRAC 2 cut(s) 6, 349
HinfI GANTC 1 cut(s) 163
HpaII CCGG 3 cut(s) 105, 377, 388
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 3 cut(s) 6, 115, 349
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 2 cut(s) 216, 485
Hpy8I GTNNAC 3 cut(s) 6, 115, 349
Hpy99I CGWCG 2 cut(s) 89, 422
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 4 cut(s) 25, 119, 304, 443
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 173, 330, 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 3 cut(s) 59, 273, 486
HpySE526I ACGT 1 cut(s) 252
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 277
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 119, 298, 306
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MfeI CAATTG 1 cut(s) 131
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 99, 243
MnlI CCTC 6 cut(s) 65, 110, 190, 217, 337, 465
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 3 cut(s) 105, 377, 388
MspR9I CCNGG 3 cut(s) 110, 168, 388
MunI CAATTG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 2 cut(s) 110, 168
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 388
NdeII GATC 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 119, 298
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 163
PflFI GACNNNGTC 2 cut(s) 10, 416
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 108, 166
PspGI CCWGG 2 cut(s) 108, 166
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 431
PsyI GACNNNGTC 2 cut(s) 10, 416
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SalI GTCGAC 2 cut(s) 4, 347
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 110, 168, 388
SetI ASST 7 cut(s) 102, 172, 255, 348, 396, 402, 481
SgrAI CRCCGGYG 1 cut(s) 376
Sse9I AATT 1 cut(s) 131
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 3 cut(s) 108, 166, 386
TaaI ACNGT 4 cut(s) 25, 119, 304, 443
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 5, 348
TaqII GACCGA 1 cut(s) 161
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 2 cut(s) 119, 298
Tsp45I GTSAC 2 cut(s) 119, 298
TspDTI ATGAA 1 cut(s) 415
TspRI CASTG 1 cut(s) 309
Tth111I GACNNNGTC 2 cut(s) 10, 416
XmiI GTMKAC 3 cut(s) 5, 114, 348
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.