Prupe.5G059600_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0022409
Physical Location & Seq
Reverse (-)
6431807 .. 6433544
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059600.1

Sequence Viewer

Length: 840 bp
ATGTGTGAACTGCCCCTTAGTCTTTACACTACGATTAGCTTGTTGCTACTTGCACAGAAAGAGATGAACTCTTTGGTGCCAGTTTTACATCCTTCACAAGTGACCACCATTGACGTTACTCAGCTGCATCATGACTCTCATACAAGGTCTGTTGCGGTCAAAACTATTCACGATGCTTGCCAAAAAAGGGGCTTTTTTCAGGTTAAGAATCACGGAGTAAGCAAAAAAGTCACTGAAAATGCTCTTGGCTCATTGTCAAAATTCTTCGATTTGCCAATGGATCAGAAGACAATATTCTTGTCAAATGATGTAAAGAAGCCAGTAAGATTAGAGACGTTTCGAGTAGACAACGTGAGTAGGGTTTCGAGAGAGCTCATCAAGCTCTATGCCTACCCTATTGAAGATTGGATTGGCTCATGGCCTCATAATCCCACAGATTTCACAGAAAACTTGGGAAAGTATGCAATTGAGGTAAGGAGATTAAGCCTTGAAATAATGGGGGCCATAATGGAGAGCTTAGGCCTCCCTCCAACCTACTTGAGGAGCAGTCTTGAGAAAGGCATGCACATGATAGTAGGTAACAAATACCCACAATGCTCCCCATCAAGCAACATACTTGGACTAGCATCACATACAGACCACACCATCATCACCATCCTTCTTGAAAGTATATCAGGCCTTGAGATCATGGATTCCAATGACAACAATGCTTGGAAGTCTGTCCCGGCAACCGGCGGTACCCTTAAGGTCCTAATAGGGAACCATCTTGAGGTCCTCAGCAATGGATTAATTGTACAAAAGTGTGTTCCACAGGGTGACTTCAAACCCTCAAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

280

Amino Acids

31.04

Weight (kDa)

6.83

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022409)

Species Orthologous Gene IDs
malus_domestica MD00G1165100.v1.1
prunus_persica Prupe.5G059600_v2.0.a1 Prupe.5G059600_v2.0.a1
pyrus_communis pycom06g04190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 737
AccB1I GGYRCC 2 cut(s) 76, 737
AccI GTMKAC 1 cut(s) 345
AciI CCGC 2 cut(s) 155, 735
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 815
AfaI GTAC 2 cut(s) 739, 795
AfiI CCNNNNNNNGG 4 cut(s) 187, 540, 731, 769
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 4 cut(s) 401, 491, 665, 823
AjuI GAANNNNNNNTTGG 4 cut(s) 228, 260, 393, 425
AluBI AGCT 5 cut(s) 39, 124, 373, 382, 516
AluI AGCT 5 cut(s) 39, 124, 373, 382, 516
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 288
AoxI GGCC 4 cut(s) 419, 501, 520, 676
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 260
AseI ATTAAT 1 cut(s) 788
Asp718I GGTACC 1 cut(s) 737
AspS9I GGNCC 3 cut(s) 501, 748, 772
AsuC2I CCSGG 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 643, 827
AvaII GGWCC 2 cut(s) 748, 772
BanI GGYRCC 2 cut(s) 76, 737
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 776
BbvI GCAGC 1 cut(s) 111
BccI CCATC 4 cut(s) 610, 653, 662, 771
BcnI CCSGG 1 cut(s) 725
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 623
BfrI CTTAAG 1 cut(s) 743
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 725
Bme18I GGWCC 2 cut(s) 748, 772
BmgT120I GGNCC 3 cut(s) 501, 748, 772
BmiI GGNNCC 4 cut(s) 78, 502, 739, 761
BmrFI CCNGG 1 cut(s) 725
BmsI GCATC 3 cut(s) 136, 163, 635
BpiI GAAGAC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 53, 85
Bpu10I CCTNAGC 2 cut(s) 517, 776
BpuEI CTTGAG 4 cut(s) 559, 572, 701, 788
BpuMI CCSGG 1 cut(s) 725
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 540, 731, 769
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 2 cut(s) 80, 320
Bse3DI GCAATG 1 cut(s) 787
BseGI GGATG 2 cut(s) 88, 654
BseLI CCNNNNNNNGG 4 cut(s) 187, 540, 731, 769
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 2 cut(s) 134, 790
BseNI ACTGG 2 cut(s) 80, 320
BseRI GAGGAG 1 cut(s) 556
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 4 cut(s) 421, 503, 522, 678
BshNI GGYRCC 2 cut(s) 76, 737
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 725, 732
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 4 cut(s) 187, 540, 731, 769
BsmAI GTCTC 1 cut(s) 326
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 4 cut(s) 421, 503, 522, 678
Bsp1286I GDGCHC 1 cut(s) 375
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 2 cut(s) 280, 684
BspACI CCGC 2 cut(s) 155, 735
BspANI GGCC 4 cut(s) 421, 503, 522, 678
BspCNI CTCAG 2 cut(s) 133, 789
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 78, 502, 739, 761
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 2 cut(s) 76, 737
BspTI CTTAAG 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 731
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 2 cut(s) 80, 320
BssAI RCCGGY 1 cut(s) 731
BssMI GATC 2 cut(s) 280, 684
BstAFI CTTAAG 1 cut(s) 743
BstAUI TGTACA 1 cut(s) 793
BstC8I GCNNGC 2 cut(s) 178, 563
BstDEI CTNAG 4 cut(s) 17, 120, 517, 776
BstENI CCTNNNNNAGG 1 cut(s) 538
BstF5I GGATG 2 cut(s) 88, 654
BstKTI GATC 2 cut(s) 283, 687
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 2 cut(s) 280, 684
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 723
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 293
BsuRI GGCC 4 cut(s) 421, 503, 522, 678
BtsCI GGATG 2 cut(s) 88, 654
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 178, 563
CciI TCATGA 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 3 cut(s) 501, 748, 772
Csp6I GTAC 2 cut(s) 738, 794
CviAII CATG 5 cut(s) 131, 417, 562, 568, 688
CviQI GTAC 2 cut(s) 738, 794
DdeI CTNAG 4 cut(s) 17, 120, 517, 776
DpnI GATC 2 cut(s) 282, 686
DpnII GATC 2 cut(s) 280, 684
DraIII CACNNNGTG 1 cut(s) 815
Ecl136II GAGCTC 1 cut(s) 373
Eco147I AGGCCT 2 cut(s) 522, 678
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 748, 772
Eco53kI GAGCTC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 538
EcoO109I RGGNCCY 2 cut(s) 748, 772
EcoT38I GRGCYC 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 5 cut(s) 134, 420, 565, 571, 691
FaqI GGGAC 1 cut(s) 707
FatI CATG 5 cut(s) 130, 416, 561, 567, 687
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 2 cut(s) 75, 641
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 1 cut(s) 623
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 4 cut(s) 421, 503, 522, 678
HapII CCGG 2 cut(s) 725, 732
Hin1II CATG 5 cut(s) 134, 420, 565, 571, 691
HinfI GANTC 3 cut(s) 134, 208, 692
HpaII CCGG 2 cut(s) 725, 732
HphI GGTGA 2 cut(s) 643, 827
Hpy166II GTNNAC 2 cut(s) 8, 346
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 6 cut(s) 131, 170, 366, 551, 662, 767
Hpy8I GTNNAC 2 cut(s) 8, 346
HpyAV CCTTC 2 cut(s) 102, 668
HpyCH4IV ACGT 3 cut(s) 114, 335, 351
HpyCH4V TGCA 4 cut(s) 53, 127, 464, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 4 cut(s) 17, 120, 517, 776
HpySE526I ACGT 3 cut(s) 114, 335, 351
Hsp92II CATG 5 cut(s) 134, 420, 565, 571, 691
KpnI GGTACC 1 cut(s) 741
Kzo9I GATC 2 cut(s) 280, 684
LmnI GCTCC 2 cut(s) 543, 602
LpnPI CCDG 7 cut(s) 93, 185, 333, 660, 738, 745, 797
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 3 cut(s) 136, 163, 635
MaeI CTAG 1 cut(s) 623
MaeII ACGT 3 cut(s) 114, 335, 351
MaeIII GTNAC 5 cut(s) 100, 115, 229, 578, 815
MalI GATC 2 cut(s) 282, 686
MboI GATC 2 cut(s) 280, 684
MboII GAAGA 3 cut(s) 256, 298, 413
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 3 cut(s) 260, 465, 789
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 554
MnlI CCTC 8 cut(s) 432, 463, 533, 534, 537, 763, 785, 838
MseI TTAA 4 cut(s) 204, 482, 744, 788
MslI CAYNNNNRTG 1 cut(s) 566
MspA1I CMGCKG 1 cut(s) 124
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 2 cut(s) 725, 732
MspR9I CCNGG 1 cut(s) 725
MunI CAATTG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 379
NciI CCSGG 1 cut(s) 725
NdeII GATC 2 cut(s) 280, 684
NlaIII CATG 5 cut(s) 134, 420, 565, 571, 691
NlaIV GGNNCC 4 cut(s) 78, 502, 739, 761
NmuCI GTSAC 3 cut(s) 100, 229, 815
NspI RCATGY 1 cut(s) 565
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 130
PceI AGGCCT 2 cut(s) 522, 678
PfeI GAWTC 2 cut(s) 208, 692
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PpuMI RGGWCCY 2 cut(s) 748, 772
PshBI ATTAAT 1 cut(s) 788
Psp124BI GAGCTC 1 cut(s) 375
Psp5II RGGWCCY 2 cut(s) 748, 772
PspN4I GGNNCC 4 cut(s) 78, 502, 739, 761
PspPI GGNCC 3 cut(s) 501, 748, 772
PspPPI RGGWCCY 2 cut(s) 748, 772
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 739, 795
RsaNI GTAC 2 cut(s) 738, 794
RseI CAYNNNNRTG 1 cut(s) 566
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 4 cut(s) 204, 482, 744, 788
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 280, 684
Sau96I GGNCC 3 cut(s) 501, 748, 772
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 725
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 3 cut(s) 136, 163, 635
SinI GGWCC 2 cut(s) 748, 772
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 5 cut(s) 538, 551, 680, 743, 767
SmoI CTYRAG 5 cut(s) 538, 551, 680, 743, 767
SphI GCATGC 1 cut(s) 565
Sse9I AATT 3 cut(s) 260, 465, 789
SseBI AGGCCT 2 cut(s) 522, 678
SsiI CCGC 2 cut(s) 155, 735
SspI AATATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 623
SstI GAGCTC 1 cut(s) 375
StuI AGGCCT 2 cut(s) 522, 678
StyD4I CCNGG 1 cut(s) 723
TaiI ACGT 3 cut(s) 117, 338, 354
TaqI TCGA 3 cut(s) 267, 340, 365
TasI AATT 3 cut(s) 260, 465, 789
TatI WGTACW 1 cut(s) 793
TfiI GAWTC 2 cut(s) 208, 692
Tru1I TTAA 4 cut(s) 204, 482, 744, 788
Tru9I TTAA 4 cut(s) 204, 482, 744, 788
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 3 cut(s) 100, 229, 815
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 3 cut(s) 100, 229, 815
TspDTI ATGAA 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 748, 772
VspI ATTAAT 1 cut(s) 788
XagI CCTNNNNNAGG 1 cut(s) 538
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.