pycom06g04190

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0022409
Physical Location & Seq
Reverse (-)
5263294 .. 5264924
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04190.2

Sequence Viewer

Length: 933 bp
ATGGAGGAAAAGATGAAGATTTTGGTGCCAATTTTGCATCCCTCGCAAGTGACCACTATTGATGTTAGCCAGCTGCACCAGGACTCTCACACAAGGTCGGTATTGGTCAAAAGTATTCACCGTGCTTGCCAAGAAATGGGGTTTTTTCAGGTTATCAATCATGGAATAAGCAAAACAGTCACTGAAAATGCTCTTGGCTCGTTGTCAAACTTCTTTGATTTGCCAATGGATCAGAAGAAGCTATTCTCGTCTGATGATTTAAGCAAGCCAGTAAGATTTGTGACTAATTCGAGGGACTTTATCAAACTTTATGCCAACCCTATTGAAAATTGGATTGATTTATGGCCTCATAATCCCACAGATTTCAGAGAAAGTTTGGGAAGGTATGCAGCGGAAGTAAAGAGATTAAGCATCGATATAATTGGAGCCATAGTTGAGAGCTTAGGCCTCGGTCCAACCTACTTGAGGAGCAGCCTGGGGCAAGGAATGCAAATGATAGTAGGCAGCCGATATCCTAGGTGCTCCTCATCTAGCAGTATACTCGGAACATCGTCACATACAGACCACAGTATCATCACCATCATTCTCGAAAGTACGTCGGGGCTTGAGATTATGGATTTCGCAGACAATAATGCTTGGAAGTCTGTTCCGGCAACCGACGCTACCCTTAAGGTTCTAGTAGGGAATCATCTCGAAATACTCAGCAACGGGTTGTACAAGAGTGTTTTCCACAGGGTGGTTCCAAACCCTGAAAGGAATAGGATTTCTATCGGTAGCTTTCTTAGCCTACCCATGGAAGAGATAATGGAGCCTGCCATGGAGCTCATTGATGAGCAGCATCCCAAAAGTTACAAGGCAAGTAGCTTAGATGAATATATCAAGTTTCTCTCCTCCAAAGAAGAAAAATCCTACATGGAGAGTTTGAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

311

Amino Acids

34.83

Weight (kDa)

6.0

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022409)

Species Orthologous Gene IDs
malus_domestica MD00G1165100.v1.1
prunus_persica Prupe.5G059600_v2.0.a1 Prupe.5G059600_v2.0.a1
pyrus_communis pycom06g04190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccB7I CCANNNNNTGG 2 cut(s) 136, 736
AccI GTMKAC 1 cut(s) 538
AciI CCGC 1 cut(s) 392
AclWI GGATC 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 736
AfaI GTAC 2 cut(s) 595, 716
AfiI CCNNNNNNNGG 4 cut(s) 136, 465, 736, 793
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 2 cut(s) 326, 925
AjnI CCWGG 2 cut(s) 78, 474
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 6 cut(s) 73, 241, 441, 777, 823, 864
AluI AGCT 6 cut(s) 73, 241, 441, 777, 823, 864
Alw21I GWGCWC 2 cut(s) 524, 825
AlwI GGATC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 2 cut(s) 344, 445
ApeKI GCWGC 5 cut(s) 73, 389, 471, 504, 835
Asp700I GAANNNNTTC 1 cut(s) 242
AspA2I CCTAGG 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 110, 568
AvaII GGWCC 1 cut(s) 452
AvrII CCTAGG 1 cut(s) 515
BaeI ACNNNNGTAYC 2 cut(s) 553, 586
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 825
Bbv12I GWGCWC 2 cut(s) 524, 825
BbvI GCAGC 5 cut(s) 60, 401, 483, 516, 847
BccI CCATC 1 cut(s) 587
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 2 cut(s) 80, 476
BfaI CTAG 3 cut(s) 516, 531, 677
BfrI CTTAAG 1 cut(s) 668
BisI GCNGC 5 cut(s) 74, 390, 472, 505, 836
BlnI CCTAGG 1 cut(s) 515
BlsI GCNGC 5 cut(s) 75, 391, 473, 506, 837
Bme1390I CCNGG 2 cut(s) 80, 476
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 4 cut(s) 27, 427, 741, 810
BmrFI CCNGG 2 cut(s) 80, 476
BmsI GCATC 3 cut(s) 46, 420, 847
Bpu10I CCTNAGC 1 cut(s) 442
BpuEI CTTGAG 2 cut(s) 484, 626
Bsa29I ATCGAT 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 767
BsaJI CCNNGG 5 cut(s) 448, 475, 515, 792, 816
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 465, 736, 793
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 767
BseBI CCWGG 2 cut(s) 80, 476
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 5 cut(s) 448, 475, 515, 792, 816
BseGI GGATG 2 cut(s) 37, 838
BseJI GATNNNNATC 1 cut(s) 767
BseLI CCNNNNNNNGG 4 cut(s) 136, 465, 736, 793
BseMII CTCAG 1 cut(s) 715
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 481, 514, 880
BseXI GCAGC 5 cut(s) 60, 401, 483, 516, 847
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 2 cut(s) 346, 447
BshNI GGYRCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 2 cut(s) 524, 825
BsiSI CCGG 1 cut(s) 650
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 4 cut(s) 136, 465, 736, 793
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 2 cut(s) 346, 447
Bsp1286I GDGCHC 2 cut(s) 524, 825
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 1 cut(s) 229
Bsp19I CCATGG 2 cut(s) 792, 816
BspACI CCGC 1 cut(s) 392
BspANI GGCC 2 cut(s) 346, 447
BspCNI CTCAG 1 cut(s) 714
BspDI ATCGAT 1 cut(s) 414
BspLI GGNNCC 4 cut(s) 27, 427, 741, 810
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 25
BspTI CTTAAG 1 cut(s) 668
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 5 cut(s) 448, 475, 515, 792, 816
BssMI GATC 1 cut(s) 229
BssNAI GTATAC 1 cut(s) 539
BssT1I CCWWGG 3 cut(s) 515, 792, 816
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 2 cut(s) 80, 476
Bst4CI ACNGT 3 cut(s) 122, 178, 569
Bst6I CTCTTC 1 cut(s) 792
BstAFI CTTAAG 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 487
BstAUI TGTACA 1 cut(s) 714
BstC8I GCNNGC 4 cut(s) 71, 127, 266, 813
BstDEI CTNAG 4 cut(s) 442, 701, 782, 865
BstDSI CCRYGG 2 cut(s) 792, 816
BstENI CCTNNNNNAGG 1 cut(s) 463
BstF5I GGATG 2 cut(s) 37, 838
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 5 cut(s) 34, 43, 487, 659, 783
BstNI CCWGG 2 cut(s) 80, 476
BstSCI CCNGG 2 cut(s) 78, 474
BstV1I GCAGC 5 cut(s) 60, 401, 483, 516, 847
BstZ17I GTATAC 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 2 cut(s) 346, 447
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 2 cut(s) 792, 816
BtsCI GGATG 2 cut(s) 37, 838
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 4 cut(s) 71, 127, 266, 813
CaiI CAGNNNCTG 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 452
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 1 cut(s) 668
Csp6I GTAC 2 cut(s) 594, 715
CviAII CATG 4 cut(s) 161, 793, 817, 913
CviQI GTAC 2 cut(s) 594, 715
DdeI CTNAG 4 cut(s) 442, 701, 782, 865
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 736
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 3 cut(s) 515, 792, 816
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 825
Eco32I GATATC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 823
EcoNI CCTNNNNNAGG 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 78, 474
EcoRV GATATC 1 cut(s) 512
EcoT14I CCWWGG 3 cut(s) 515, 792, 816
EcoT38I GRGCYC 1 cut(s) 825
ErhI CCWWGG 3 cut(s) 515, 792, 816
FaeI CATG 4 cut(s) 164, 796, 820, 916
FaqI GGGAC 1 cut(s) 308
FatI CATG 4 cut(s) 160, 792, 816, 912
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 5 cut(s) 74, 390, 472, 505, 836
FokI GGATG 2 cut(s) 24, 825
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 5 cut(s) 74, 390, 472, 505, 836
FspBI CTAG 3 cut(s) 516, 531, 677
GluI GCNGC 5 cut(s) 74, 390, 472, 505, 836
HaeIII GGCC 2 cut(s) 346, 447
HapII CCGG 1 cut(s) 650
HgaI GACGC 1 cut(s) 668
Hin1II CATG 4 cut(s) 164, 796, 820, 916
HinfI GANTC 2 cut(s) 83, 685
HpaII CCGG 1 cut(s) 650
HphI GGTGA 2 cut(s) 110, 568
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 4 cut(s) 234, 253, 368, 545
Hpy188III TCNNGA 2 cut(s) 587, 692
Hpy8I GTNNAC 1 cut(s) 539
Hpy99I CGWCG 2 cut(s) 601, 662
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 3 cut(s) 122, 178, 569
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 4 cut(s) 37, 76, 389, 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 43, 487, 659, 783
HpyF3I CTNAG 4 cut(s) 442, 701, 782, 865
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 4 cut(s) 164, 796, 820, 916
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 5 cut(s) 425, 468, 527, 808, 820
Lsp1109I GCAGC 5 cut(s) 60, 401, 483, 516, 847
LweI GCATC 3 cut(s) 46, 420, 847
MaeI CTAG 3 cut(s) 516, 531, 677
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 5 cut(s) 49, 178, 280, 552, 848
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 4 cut(s) 28, 247, 809, 911
MhlI GDGCHC 2 cut(s) 524, 825
MluCI AATT 4 cut(s) 30, 286, 328, 420
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 7 cut(s) 52, 285, 357, 458, 459, 535, 901
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 3 cut(s) 260, 407, 669
MspA1I CMGCKG 2 cut(s) 73, 392
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 1 cut(s) 650
MspR9I CCNGG 2 cut(s) 80, 476
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 2 cut(s) 80, 476
MwoI GCNNNNNNNGC 5 cut(s) 34, 43, 487, 659, 783
NcoI CCATGG 2 cut(s) 792, 816
NdeII GATC 1 cut(s) 229
NlaIII CATG 4 cut(s) 164, 796, 820, 916
NlaIV GGNNCC 4 cut(s) 27, 427, 741, 810
NmuCI GTSAC 4 cut(s) 49, 178, 280, 552
PceI AGGCCT 1 cut(s) 447
PctI GAATGC 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 685
PflMI CCANNNNNTGG 2 cut(s) 136, 736
PkrI GCNGC 5 cut(s) 75, 391, 473, 506, 837
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 78, 474
PspGI CCWGG 2 cut(s) 78, 474
PspN4I GGNNCC 4 cut(s) 27, 427, 741, 810
PspPI GGNCC 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 2 cut(s) 595, 716
RsaNI GTAC 2 cut(s) 594, 715
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 3 cut(s) 260, 407, 669
SatI GCNGC 5 cut(s) 74, 390, 472, 505, 836
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 80, 476
SduI GDGCHC 2 cut(s) 524, 825
SfaNI GCATC 3 cut(s) 46, 420, 847
SinI GGWCC 1 cut(s) 452
SmlI CTYRAG 3 cut(s) 463, 605, 668
SmoI CTYRAG 3 cut(s) 463, 605, 668
Sse9I AATT 4 cut(s) 30, 286, 328, 420
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 1 cut(s) 392
SspMI CTAG 3 cut(s) 516, 531, 677
SstI GAGCTC 1 cut(s) 825
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 78, 474
StyI CCWWGG 3 cut(s) 515, 792, 816
TaaI ACNGT 3 cut(s) 122, 178, 569
TaiI ACGT 1 cut(s) 599
TaqI TCGA 4 cut(s) 290, 414, 588, 693
TaqII GACCGA 1 cut(s) 440
TasI AATT 4 cut(s) 30, 286, 328, 420
TatI WGTACW 1 cut(s) 714
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 3 cut(s) 260, 407, 669
Tru9I TTAA 3 cut(s) 260, 407, 669
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 4 cut(s) 49, 178, 280, 552
TseI GCWGC 5 cut(s) 73, 389, 471, 504, 835
Tsp45I GTSAC 4 cut(s) 49, 178, 280, 552
TspDTI ATGAA 2 cut(s) 29, 885
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 2 cut(s) 136, 736
Vha464I CTTAAG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 452
XagI CCTNNNNNAGG 1 cut(s) 463
XmaJI CCTAGG 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 538
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 3 cut(s) 516, 531, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.