Prupe.5G066700_v2.0.a1

Calcium-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
8129573 .. 8130280
708 bp
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UTR
Exon/CDS
Intron
Prupe.5G066700.1

Sequence Viewer

Length: 252 bp
ATGGATTCCGATATGACCGATGAGCAAGTCGAGGAGCTCAAGCAAGCCTTCAACATTTTTGACAAGGATGGCAATGGCACTATCACTACCGATGAGTTGAGCAATGTATTGACCTCACTAGGGCAAACCCCATCTGAGGAAGAACTGGAAGAATTTCTTCAACAGATGGGTGGTGATAATGGGAGGGTTCGCTTTGATCAATACTTGGTCTTCATGGAAAAATTAATGTACCCTAATGGTGCGTCTGAATGA

Protein Analysis

84

Amino Acids

9.42

Weight (kDa)

4.05

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022315)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 120, 136
AgsI TTSAA 2 cut(s) 52, 161
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 152
AseI ATTAAT 1 cut(s) 224
Asp700I GAANNNNTTC 2 cut(s) 153, 156
AsuHPI GGTGA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 3 cut(s) 62, 139, 160
BclI TGATCA 1 cut(s) 196
BfaI CTAG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 136
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 2 cut(s) 79, 109
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 120, 136
BseMI GCAATG 2 cut(s) 79, 109
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 120, 136
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 79, 109
BsrI ACTGG 1 cut(s) 150
BssMI GATC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 45
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 214
CviJI RGCY 2 cut(s) 37, 47
CviKI_1 RGCY 2 cut(s) 37, 47
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 1 cut(s) 217
FaiI YATR 2 cut(s) 14, 215
FalI AAGNNNNNCTT 4 cut(s) 32, 64, 141, 173
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 196
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 1 cut(s) 119
HgaI GACGC 1 cut(s) 231
Hin1II CATG 1 cut(s) 217
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 10, 136, 247
HpyAV CCTTC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 1 cut(s) 131
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 149, 152, 161, 202
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 152, 221
MnlI CCTC 4 cut(s) 25, 124, 130, 177
MroXI GAANNNNTTC 2 cut(s) 153, 156
MseI TTAA 1 cut(s) 224
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 217
PdmI GAANNNNTTC 2 cut(s) 153, 156
PfeI GAWTC 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 39
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 224
Sau3AI GATC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 39
SetI ASST 2 cut(s) 39, 116
SgeI CNNG 9 cut(s) 38, 43, 52, 56, 76, 131, 158, 217, 226
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 2 cut(s) 152, 221
SspMI CTAG 1 cut(s) 119
SstI GAGCTC 1 cut(s) 39
TaqI TCGA 1 cut(s) 30
TaqII GACCGA 1 cut(s) 32
TasI AATT 2 cut(s) 152, 221
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 202
VspI ATTAAT 1 cut(s) 224
XapI RAATTY 1 cut(s) 152
XmnI GAANNNNTTC 2 cut(s) 153, 156
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.