Prupe.5G214800_v2.0.a1

PAN-like domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
16921867 .. 16923150
1284 bp
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UTR
Exon/CDS
Intron
Prupe.5G214800.1

Sequence Viewer

Length: 186 bp
ATGAGCCCAAAAATTTCAGATTTTGAATTGGCATGTATCTTTCAAGGGACACAGAATCTAGCAAACACTCAGAGTCAGAAGGTTGTGGGAACTCTTGTGCGGCTATATGTCTCTGGAGTATGCCTGCCATGGGCGGGATATTTTCTGAAAAATCTCATGAATATAGCTTTGGGGTCTTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

62

Amino Acids

6.69

Weight (kDa)

8.59

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 100, 134
AcsI RAATTY 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 130, 134
AgsI TTSAA 2 cut(s) 26, 44
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 12
BanII GRGCYC 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 134
BseDI CCNNGG 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 130, 134
BseMII CTCAG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 130, 134
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 2 cut(s) 100, 134
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 128
BstMAI GTCTC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 156
CviAII CATG 3 cut(s) 33, 129, 157
CviJI RGCY 3 cut(s) 6, 103, 167
CviKI_1 RGCY 3 cut(s) 6, 103, 167
DdeI CTNAG 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 3 cut(s) 36, 132, 160
FaiI YATR 7 cut(s) 34, 106, 108, 121, 130, 158, 164
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 32, 128, 156
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 135
Hin1II CATG 3 cut(s) 36, 132, 160
HinfI GANTC 2 cut(s) 55, 73
Hpy188I TCNGA 4 cut(s) 19, 72, 78, 147
Hpy188III TCNNGA 2 cut(s) 114, 157
HpyAV CCTTC 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 3 cut(s) 36, 132, 160
LpnPI CCDG 2 cut(s) 99, 137
MaeI CTAG 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 12, 26
MlyI GAGTC 1 cut(s) 82
NcoI CCATGG 1 cut(s) 128
NlaIII CATG 3 cut(s) 36, 132, 160
NspI RCATGY 1 cut(s) 36
PagI TCATGA 1 cut(s) 156
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
SatI GCNGC 1 cut(s) 101
SchI GAGTC 1 cut(s) 82
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 84, 169
SgeI CNNG 9 cut(s) 45, 56, 71, 107, 126, 136, 141, 147, 169
Sse9I AATT 2 cut(s) 12, 26
SsiI CCGC 2 cut(s) 100, 134
SspMI CTAG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 128
TasI AATT 2 cut(s) 12, 26
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 173
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 36
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.