Prupe.5G215000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
16926353 .. 16927210
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G215000.2

Sequence Viewer

Length: 321 bp
ATGCCCAACTCGGGGGAACTATTGATTTCATTTCTGATGGCAATGGGAAGAGCAGTGCTTGACTGGCTAAACGGTTCAATATTATTCAAGGTGTTGCTAGAGGACTTGTTTATCTCCACCATGATTCTTGTTTTGAAGGTGTTGGATGAGAAGATGAGGCCAAAAATTTCAAATTTTGGTTGGCACGTATCTTTCAAGGGACACAGAGCAAACACTCAGAGTCAGAAGGTTGTGGGAACTCTTGTGTGGCTATATGTCTCTGGAGGGGCGGGATATTTTCTGAAAATTCTCATGTATATAACTTTGGGGTCTTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

9.42

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AcsI RAATTY 3 cut(s) 165, 172, 285
AfiI CCNNNNNNNGG 2 cut(s) 11, 12
AgsI TTSAA 5 cut(s) 78, 88, 136, 171, 196
Alw26I GTCTC 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 3 cut(s) 165, 172, 285
AvaI CYCGRG 1 cut(s) 10
BccI CCATC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 12
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 48
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 11, 12
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 68
BshFI GGCC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 11, 12
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 10
BspACI CCGC 1 cut(s) 269
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 43
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
CviAII CATG 2 cut(s) 121, 292
CviJI RGCY 3 cut(s) 67, 160, 250
CviKI_1 RGCY 3 cut(s) 67, 160, 250
DdeI CTNAG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 10
FaeI CATG 2 cut(s) 124, 295
FaiI YATR 6 cut(s) 122, 253, 255, 293, 297, 299
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 120, 291
FauI CCCGC 1 cut(s) 262
FokI GGATG 1 cut(s) 158
FspBI CTAG 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 160
Hin1II CATG 2 cut(s) 124, 295
HinfI GANTC 2 cut(s) 124, 220
Hpy188I TCNGA 4 cut(s) 36, 219, 225, 282
Hpy188III TCNNGA 1 cut(s) 261
HpyAV CCTTC 2 cut(s) 130, 220
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 124, 295
LguI GCTCTTC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 49, 246
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 186
MboII GAAGA 2 cut(s) 60, 163
MluCI AATT 3 cut(s) 165, 172, 285
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 94, 150, 257
MwoI GCNNNNNNNGC 1 cut(s) 64
NlaIII CATG 2 cut(s) 124, 295
PciSI GCTCTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 124
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 43
SchI GAGTC 1 cut(s) 229
SetI ASST 4 cut(s) 93, 141, 189, 231
Sse9I AATT 3 cut(s) 165, 172, 285
SsiI CCGC 1 cut(s) 269
SspI AATATT 1 cut(s) 81
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 189
TasI AATT 3 cut(s) 165, 172, 285
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 1 cut(s) 60
XapI RAATTY 3 cut(s) 165, 172, 285
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.